Back to Build/check report for BioC 3.12 experimental data |
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This page was generated on 2021-05-06 14:10:16 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the waveTilingData package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 387/398 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
Kristof De Beuf
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: waveTilingData |
Version: 1.26.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:waveTilingData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings waveTilingData_1.26.0.tar.gz |
StartedAt: 2021-05-06 12:55:57 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 12:58:42 -0400 (Thu, 06 May 2021) |
EllapsedTime: 165.6 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: waveTilingData.Rcheck |
Warnings: 3 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:waveTilingData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings waveTilingData_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/waveTilingData.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘waveTilingData/DESCRIPTION’ ... OK * this is package ‘waveTilingData’ version ‘1.26.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘waveTilingData’ can be installed ... WARNING Found the following significant warnings: Warning: Package 'waveTilingData' is deprecated and will be removed from See ‘/home/biocbuild/bbs-3.12-data-experiment/meat/waveTilingData.Rcheck/00install.out’ for details. * checking installed package size ... NOTE installed size is 240.9Mb sub-directories of 1Mb or more: data 240.8Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... WARNING Error loading dataset 'leafdevBQ': Error in .requirePackage(package) : unable to find required package 'waveTiling' Error loading dataset 'leafdevFit': Error in .requirePackage(package) : unable to find required package 'waveTiling' Error loading dataset 'leafdevInfCompare': Error in .requirePackage(package) : unable to find required package 'waveTiling' Error loading dataset 'leafdevMapAndFilterTAIR9': Error in .requirePackage(package) : unable to find required package 'waveTiling' The dataset(s) may use package(s) not declared in the DESCRIPTION file. * checking data for ASCII and uncompressed saves ... OK * checking examples ... WARNING Found the following significant warnings: Warning: working directory was changed to ‘/home/biocbuild/bbs-3.12-bioc/R/library/waveTilingData/data’, resetting Examples with CPU (user + system) or elapsed time > 5s user system elapsed leafdev 20.260 0.584 20.853 leafdevBQ 14.060 0.472 14.545 leafdevMapAndFilterTAIR9 7.348 0.112 7.462 * checking PDF version of manual ... OK * DONE Status: 3 WARNINGs, 2 NOTEs See ‘/home/biocbuild/bbs-3.12-data-experiment/meat/waveTilingData.Rcheck/00check.log’ for details.
waveTilingData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL waveTilingData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘waveTilingData’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning: Package 'waveTilingData' is deprecated and will be removed from Bioconductor version 3.13 ** testing if installed package can be loaded from final location Warning: Package 'waveTilingData' is deprecated and will be removed from Bioconductor version 3.13 ** testing if installed package keeps a record of temporary installation path * DONE (waveTilingData)
waveTilingData.Rcheck/waveTilingData-Ex.timings
name | user | system | elapsed | |
leafdev | 20.260 | 0.584 | 20.853 | |
leafdevBQ | 14.060 | 0.472 | 14.545 | |
leafdevFit | 0.740 | 0.024 | 0.764 | |
leafdevInfCompare | 0.728 | 0.024 | 0.753 | |
leafdevMapAndFilterTAIR9 | 7.348 | 0.112 | 7.462 | |