Back to Build/check report for BioC 3.12 experimental data |
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This page was generated on 2021-05-06 14:10:14 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the SCATEData package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 332/398 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
SCATEData 1.0.0 (landing page) Wenpin Hou
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: SCATEData |
Version: 1.0.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:SCATEData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings SCATEData_1.0.0.tar.gz |
StartedAt: 2021-05-06 12:43:39 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 12:47:45 -0400 (Thu, 06 May 2021) |
EllapsedTime: 246.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SCATEData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:SCATEData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings SCATEData_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/SCATEData.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SCATEData/DESCRIPTION’ ... OK * this is package ‘SCATEData’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SCATEData’ can be installed ... OK * checking installed package size ... NOTE installed size is 190.0Mb sub-directories of 1Mb or more: extdata 189.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: hg19.rds.Rd:18-19: Dropping empty section \usage prepare_Rd: mm10.rds.Rd:18-19: Dropping empty section \usage * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed hg19.rds 9.684 0.212 10.594 mm10.rds 6.172 0.188 6.758 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.12-data-experiment/meat/SCATEData.Rcheck/00check.log’ for details.
SCATEData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL SCATEData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘SCATEData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2020-10-27 ** testing if installed package can be loaded from final location snapshotDate(): 2020-10-27 ** testing if installed package keeps a record of temporary installation path * DONE (SCATEData)
SCATEData.Rcheck/SCATEData-Ex.timings
name | user | system | elapsed | |
GSM1596831.bam | 0.068 | 0.000 | 0.188 | |
GSM1596840.bam | 0.096 | 0.004 | 0.228 | |
GSM1596874.bam | 0.072 | 0.000 | 0.071 | |
GSM1596881.bam | 0.068 | 0.000 | 0.076 | |
GSM1596940.bam | 0.032 | 0.000 | 0.034 | |
GSM1596942.bam | 0.072 | 0.000 | 0.071 | |
GSM1596944.bam | 0.104 | 0.000 | 0.212 | |
GSM1596961.bam | 0.120 | 0.012 | 0.168 | |
GSM1597041.bam | 0.092 | 0.004 | 0.098 | |
GSM1597096.bam | 0.072 | 0.000 | 0.149 | |
SRR1779746.bam | 0.120 | 0.000 | 0.213 | |
SRR1779805.bam | 0.132 | 0.004 | 0.286 | |
SRR1779856.bam | 0.024 | 0.000 | 0.038 | |
SRR1779874.bam | 0.144 | 0.000 | 0.185 | |
SRR1779956.bam | 0.088 | 0.004 | 0.094 | |
SRR1779959.bam | 0.092 | 0.000 | 0.092 | |
SRR1779973.bam | 0.056 | 0.000 | 0.074 | |
SRR1780018.bam | 0.028 | 0.000 | 0.036 | |
SRR1780020.bam | 0.104 | 0.004 | 0.109 | |
SRR1780054.bam | 0.116 | 0.004 | 0.124 | |
hg19.rds | 9.684 | 0.212 | 10.594 | |
mm10.rds | 6.172 | 0.188 | 6.758 | |