Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:37:21 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the wpm package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1956/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
wpm 1.0.0 (landing page) Helene Borges
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: wpm |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:wpm.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings wpm_1.0.0.tar.gz |
StartedAt: 2021-05-06 07:20:16 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 07:21:30 -0400 (Thu, 06 May 2021) |
EllapsedTime: 73.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: wpm.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:wpm.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings wpm_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/wpm.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘wpm/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘wpm’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘wpm’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed convertESet 5.558 0.230 11.931 convertSE 5.071 0.144 5.219 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
wpm.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL wpm ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘wpm’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ── This is the Well-Plate Maker package. ─────────────────────────────────────── If you want to use the shiny application, then simply run: `wpm()`.If you want to see the Tutorial vignette and use WPM in command line, run: `browseVignettes('wpm')`. ** testing if installed package can be loaded from final location ── This is the Well-Plate Maker package. ─────────────────────────────────────── If you want to use the shiny application, then simply run: `wpm()`.If you want to see the Tutorial vignette and use WPM in command line, run: `browseVignettes('wpm')`. ** testing if installed package keeps a record of temporary installation path * DONE (wpm)
wpm.Rcheck/tests/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(wpm) ── This is the Well-Plate Maker package. ─────────────────────────────────────── If you want to use the shiny application, then simply run: `wpm()`.If you want to see the Tutorial vignette and use WPM in command line, run: `browseVignettes('wpm')`. cli-67238-1 > testthat::test_check("wpm") 2021-05-06 07:21:10 WARNING::the dimensions of the plate are incompatible with the wells. 2021-05-06 07:21:10 WARNING::the dimensions of the plate are incompatible with the wells. 2021-05-06 07:21:10 INFO::gp_fiels: Group, class: character [ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ] > > proc.time() user system elapsed 13.598 0.602 14.314
wpm.Rcheck/wpm-Ex.timings
name | user | system | elapsed | |
convertCSV | 0.124 | 0.012 | 0.136 | |
convertESet | 5.558 | 0.230 | 11.931 | |
convertSE | 5.071 | 0.144 | 5.219 | |
convertVector2Df | 0.067 | 0.006 | 0.073 | |
drawMap | 0.785 | 0.085 | 0.871 | |
wpm | 0 | 0 | 0 | |
wrapperWPM | 0.240 | 0.027 | 0.267 | |