Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:34:11 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the waddR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1948/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
waddR 1.4.0 (landing page) Julian Flesch
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: waddR |
Version: 1.4.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/waddR_1.4.0.tar.gz && rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=waddR.buildbin-libdir waddR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL waddR_1.4.0.zip && rm waddR_1.4.0.tar.gz waddR_1.4.0.zip |
StartedAt: 2021-05-05 17:49:02 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 17:50:49 -0400 (Wed, 05 May 2021) |
EllapsedTime: 107.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/waddR_1.4.0.tar.gz && rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=waddR.buildbin-libdir waddR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL waddR_1.4.0.zip && rm waddR_1.4.0.tar.gz waddR_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 44406 100 44406 0 0 2943k 0 --:--:-- --:--:-- --:--:-- 3097k install for i386 * installing *source* package 'waddR' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c wasserstein.cpp -o wasserstein.o wasserstein.cpp: In function 'std::vector<double> rep_weighted(std::vector<double>, std::vector<int, std::allocator<int> >)': wasserstein.cpp:348:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i=0; i<x.size(); i++) { ~^~~~~~~~~ wasserstein.cpp: In function 'std::vector<double> concat(std::vector<double>&, std::vector<double>&)': wasserstein.cpp:386:27: warning: variable 'out_it_end' set but not used [-Wunused-but-set-variable] vector<double>::iterator out_it_end = out.end(); ^~~~~~~~~~ wasserstein.cpp: In function 'std::vector<int, std::allocator<int> > interval_table(const std::vector<double>&, const std::vector<double>&, int)': wasserstein.cpp:584:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] while (data_i < datavec.size()) { ~~~~~~~^~~~~~~~~~~~~~~~ wasserstein.cpp: In function 'double cor_test_export(Rcpp::NumericVector, Rcpp::NumericVector)': wasserstein.cpp:1094:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++) { x[i] = x_[i];} ~^~~~~~~~~ wasserstein.cpp:1095:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int j=0; j<y.size(); j++) { y[j] = y_[j];} ~^~~~~~~~~ wasserstein.cpp: In instantiation of 'double cor(const std::vector<T>&, const std::vector<T>&, double, double) [with T = double]': wasserstein.cpp:720:49: required from here wasserstein.cpp:439:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++){ wasserstein.cpp: In instantiation of 'std::vector<T> operator-(const std::vector<T>&, const std::vector<T>&) [with T = double]': wasserstein.cpp:782:44: required from here wasserstein.cpp:121:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++) { wasserstein.cpp: In instantiation of 'std::vector<T> cumSum(const std::vector<T>&, int) [with T = double]': wasserstein.cpp:890:17: required from here wasserstein.cpp:472:47: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] int upper = ((last_index > 0) && (last_index <= x.size()) ~~~~~~~~~~~~^~~~~~~~~~~~ wasserstein.cpp: In instantiation of 'std::vector<T> operator*(const std::vector<T>&, const std::vector<T>&) [with T = double]': wasserstein.cpp:918:62: required from here wasserstein.cpp:101:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++) { wasserstein.cpp: In instantiation of 'std::vector<T> operator+(std::vector<T>, std::vector<T>) [with T = double]': wasserstein.cpp:939:15: required from here wasserstein.cpp:53:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++) { wasserstein.cpp: In instantiation of 'std::vector<T> operator/(const std::vector<T>&, const std::vector<T>&) [with T = double]': wasserstein.cpp:1052:15: required from here wasserstein.cpp:169:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++) { wasserstein.cpp: In instantiation of 'std::vector<T> quantile(const std::vector<T>&, std::vector<double>, int) [with T = double]': wasserstein.cpp:1168:27: required from here wasserstein.cpp:501:4: warning: unused variable 'max_x' [-Wunused-variable] T max_x = x_sorted[n-1]; ^~~~~ C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o waddR.dll tmp.def RcppExports.o wasserstein.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/waddR.buildbin-libdir/00LOCK-waddR/00new/waddR/libs/i386 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'waddR' finding HTML links ... done brownianBridgeEmpcdf.url html dot-brownianBridgeEmpcdf html dot-combinePVal html dot-fishersCombinedPval html dot-quantileCorrelation html dot-relativeError html dot-testWass html dot-wassPermProcedure html dot-wassersteinTestAsy html dot-wassersteinTestSp html permutations html squared_wass_approx html squared_wass_decomp html testZeroes-method html waddR-package html wasserstein.sc-method html wasserstein.test html wasserstein_metric html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'waddR' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c wasserstein.cpp -o wasserstein.o wasserstein.cpp: In function 'std::vector<double> rep_weighted(std::vector<double>, std::vector<int, std::allocator<int> >)': wasserstein.cpp:348:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0; i<x.size(); i++) { ~^~~~~~~~~ wasserstein.cpp: In function 'std::vector<double> concat(std::vector<double>&, std::vector<double>&)': wasserstein.cpp:386:27: warning: variable 'out_it_end' set but not used [-Wunused-but-set-variable] vector<double>::iterator out_it_end = out.end(); ^~~~~~~~~~ wasserstein.cpp: In function 'std::vector<int, std::allocator<int> > interval_table(const std::vector<double>&, const std::vector<double>&, int)': wasserstein.cpp:584:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] while (data_i < datavec.size()) { ~~~~~~~^~~~~~~~~~~~~~~~ wasserstein.cpp: In function 'double cor_test_export(Rcpp::NumericVector, Rcpp::NumericVector)': wasserstein.cpp:1094:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++) { x[i] = x_[i];} ~^~~~~~~~~ wasserstein.cpp:1095:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int j=0; j<y.size(); j++) { y[j] = y_[j];} ~^~~~~~~~~ wasserstein.cpp: In instantiation of 'double cor(const std::vector<T>&, const std::vector<T>&, double, double) [with T = double]': wasserstein.cpp:720:49: required from here wasserstein.cpp:439:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++){ wasserstein.cpp: In instantiation of 'std::vector<T> operator-(const std::vector<T>&, const std::vector<T>&) [with T = double]': wasserstein.cpp:782:44: required from here wasserstein.cpp:121:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++) { wasserstein.cpp: In instantiation of 'std::vector<T> cumSum(const std::vector<T>&, int) [with T = double]': wasserstein.cpp:890:17: required from here wasserstein.cpp:472:47: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] int upper = ((last_index > 0) && (last_index <= x.size()) ~~~~~~~~~~~~^~~~~~~~~~~~ wasserstein.cpp: In instantiation of 'std::vector<T> operator*(const std::vector<T>&, const std::vector<T>&) [with T = double]': wasserstein.cpp:918:62: required from here wasserstein.cpp:101:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++) { wasserstein.cpp: In instantiation of 'std::vector<T> operator+(std::vector<T>, std::vector<T>) [with T = double]': wasserstein.cpp:939:15: required from here wasserstein.cpp:53:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++) { wasserstein.cpp: In instantiation of 'std::vector<T> operator/(const std::vector<T>&, const std::vector<T>&) [with T = double]': wasserstein.cpp:1052:15: required from here wasserstein.cpp:169:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int i=0; i<x.size(); i++) { wasserstein.cpp: In instantiation of 'std::vector<T> quantile(const std::vector<T>&, std::vector<double>, int) [with T = double]': wasserstein.cpp:1168:27: required from here wasserstein.cpp:501:4: warning: unused variable 'max_x' [-Wunused-variable] T max_x = x_sorted[n-1]; ^~~~~ C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o waddR.dll tmp.def RcppExports.o wasserstein.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/waddR.buildbin-libdir/waddR/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'waddR' as waddR_1.4.0.zip * DONE (waddR) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'waddR' successfully unpacked and MD5 sums checked