Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:34:10 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the vsn package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1945/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
vsn 3.58.0 (landing page) Wolfgang Huber
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: vsn |
Version: 3.58.0 |
Command: rm -rf vsn.buildbin-libdir && mkdir vsn.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=vsn.buildbin-libdir vsn_3.58.0.tar.gz |
StartedAt: 2021-05-06 10:21:00 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 10:21:18 -0400 (Thu, 06 May 2021) |
EllapsedTime: 17.4 seconds |
RetCode: 0 |
Status: OK |
PackageFile: vsn_3.58.0.zip |
PackageFileSize: 1.564 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf vsn.buildbin-libdir && mkdir vsn.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=vsn.buildbin-libdir vsn_3.58.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'vsn' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vsn.c -o vsn.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vsn2.c -o vsn2.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o vsn.dll tmp.def init.o vsn.o vsn2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/vsn.buildbin-libdir/00LOCK-vsn/00new/vsn/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'vsn' finding HTML links ... done class.vsn html class.vsnInput html justvsn html kidney html lymphoma html meanSdPlot html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpGawBKU/R.INSTALLc6094155e/vsn/man/meanSdPlot.Rd:43: file link 'stat_binhex' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpGawBKU/R.INSTALLc6094155e/vsn/man/meanSdPlot.Rd:44: file link 'stat_binhex' in package 'ggplot2' does not exist and so has been treated as a topic normalize.AffyBatch.vsn html sagmbSimulateData html scalingFactorTransformation html vsn-package html vsn2 html vsn2trsf html vsnLikelihood html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'vsn' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vsn.c -o vsn.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vsn2.c -o vsn2.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o vsn.dll tmp.def init.o vsn.o vsn2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/vsn.buildbin-libdir/vsn/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'vsn' as vsn_3.58.0.zip * DONE (vsn)