Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:29:35 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the twoddpcr package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1914/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
twoddpcr 1.14.0 (landing page) Anthony Chiu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: twoddpcr |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings twoddpcr_1.14.0.tar.gz |
StartedAt: 2021-05-06 06:55:08 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 06:57:44 -0400 (Thu, 06 May 2021) |
EllapsedTime: 156.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: twoddpcr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings twoddpcr_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/twoddpcr.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘twoddpcr/DESCRIPTION’ ... OK * this is package ‘twoddpcr’ version ‘1.14.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘twoddpcr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed knnClassify 9.948 0.024 9.988 ggplot.well 7.552 0.108 7.665 gridClassify 6.640 0.040 6.687 flatPlot 5.948 0.048 6.013 dropletPlot 5.112 0.052 5.171 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(twoddpcr) > > test_check("twoddpcr") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 156 ] > > proc.time() user system elapsed 10.932 0.196 11.154
twoddpcr.Rcheck/twoddpcr-Ex.timings
name | user | system | elapsed | |
amplitudes | 0.752 | 0.028 | 0.783 | |
basicsSummary | 0.008 | 0.000 | 0.006 | |
castSummary | 0.024 | 0.000 | 0.022 | |
classCov | 0.056 | 0.000 | 0.056 | |
classMeans | 0.072 | 0.004 | 0.074 | |
classStats | 0.096 | 0.004 | 0.100 | |
clusterCentres | 1.144 | 0.004 | 1.151 | |
copiesSummary | 0.008 | 0.000 | 0.005 | |
ddpcrPlate-class | 0.448 | 0.000 | 0.458 | |
ddpcrWell-class | 0.032 | 0.000 | 0.034 | |
ddpcrWell-methods | 0.508 | 0.004 | 0.511 | |
dropletPlot | 5.112 | 0.052 | 5.171 | |
exportTable | 0.136 | 0.008 | 0.162 | |
extractPlateName | 0.000 | 0.000 | 0.001 | |
extractWellNames | 0.000 | 0.000 | 0.001 | |
facetPlot | 3.300 | 0.068 | 3.370 | |
flatPlot | 5.948 | 0.048 | 6.013 | |
fullCopiesSummary | 0.004 | 0.000 | 0.006 | |
fullCountsSummary | 0.032 | 0.000 | 0.031 | |
ggplot.well | 7.552 | 0.108 | 7.665 | |
gridClassify | 6.640 | 0.040 | 6.687 | |
heatPlot | 2.232 | 0.016 | 2.253 | |
kmeansClassify | 1.916 | 0.000 | 1.922 | |
knnClassify | 9.948 | 0.024 | 9.988 | |
mahalanobisRain | 1.208 | 0.000 | 1.207 | |
mutantCopiesSummary | 0.008 | 0.000 | 0.008 | |
numDroplets | 0.480 | 0.000 | 0.483 | |
parseClusterCounts | 0.008 | 0.004 | 0.013 | |
plateClassification | 1.388 | 0.000 | 1.389 | |
plateClassificationMethod | 0.492 | 0.000 | 0.493 | |
plateSummary | 3.072 | 0.000 | 3.077 | |
positiveCounts | 0.040 | 0.004 | 0.042 | |
readCSVDataFrame | 0.02 | 0.00 | 0.02 | |
relabelClasses | 0.352 | 0.000 | 0.351 | |
removeDropletClasses | 1.040 | 0.000 | 1.047 | |
renormalisePlate | 4.684 | 0.000 | 4.688 | |
sdRain | 4.296 | 0.004 | 4.309 | |
setChannelNames | 0.000 | 0.000 | 0.001 | |
setDropletVolume | 0 | 0 | 0 | |
sortDataFrame | 0.004 | 0.000 | 0.002 | |
sortWells | 0.660 | 0.000 | 0.662 | |
thresholdClassify | 3.328 | 0.000 | 3.336 | |
wellClassification | 0.048 | 0.000 | 0.051 | |
wellClassificationMethod | 0.052 | 0.000 | 0.051 | |
whiteTheme | 1.660 | 0.004 | 1.667 | |
wildTypeCopiesSummary | 0.004 | 0.000 | 0.004 | |