Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:34:01 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the transcriptR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1887/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
transcriptR 1.18.0 (landing page) Armen R. Karapetyan
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: transcriptR |
Version: 1.18.0 |
Command: rm -rf transcriptR.buildbin-libdir && mkdir transcriptR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transcriptR.buildbin-libdir transcriptR_1.18.0.tar.gz |
StartedAt: 2021-05-06 10:17:46 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 10:19:19 -0400 (Thu, 06 May 2021) |
EllapsedTime: 93.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: transcriptR_1.18.0.zip |
PackageFileSize: 3.195 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf transcriptR.buildbin-libdir && mkdir transcriptR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transcriptR.buildbin-libdir transcriptR_1.18.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'transcriptR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'transcriptR' finding HTML links ... done ChipDataSet-class html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/ChipDataSet-class.Rd:15: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/ChipDataSet-class.Rd:17: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic TranscriptionDataSet-class html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/TranscriptionDataSet-class.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/TranscriptionDataSet-class.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/TranscriptionDataSet-class.Rd:26: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/TranscriptionDataSet-class.Rd:29: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/TranscriptionDataSet-class.Rd:43: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic addFeature-methods html annot html finding level-2 HTML links ... done annotateTranscripts-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/annotateTranscripts-methods.Rd:17: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/annotateTranscripts-methods.Rd:24: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic breakTranscriptsByPeaks-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/breakTranscriptsByPeaks-methods.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic cds html constructCDS html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/constructCDS.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/constructCDS.Rd:22: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/constructCDS.Rd:44: file link 'ScanBamParam' in package 'Rsamtools' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/constructCDS.Rd:65: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic constructTDS html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/constructTDS.Rd:13: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/constructTDS.Rd:29: file link 'ScanBamParam' in package 'Rsamtools' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/constructTDS.Rd:49: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic detectTranscripts-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/detectTranscripts-methods.Rd:42: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/detectTranscripts-methods.Rd:47: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic estimateBackground-methods html estimateGapDistance-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/estimateGapDistance-methods.Rd:20: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic exportCoverage-methods html getConfusionMatrix-methods html getGenomicAnnot-methods html getPeaks-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/getPeaks-methods.Rd:17: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic getPredictorSignificance-methods html getProbTreshold-methods html getQuadProb-methods html getTestedGapDistances-methods html getTranscripts-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpsrZdzS/R.INSTALL2934c383ff7/transcriptR/man/getTranscripts-methods.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic peaksToBed-methods html plotErrorRate-methods html plotFeatures-methods html plotGenomicAnnot-methods html plotROC-methods html predictStrand-methods html predictTssOverlap-methods html show html tds html transcriptsToBed-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'transcriptR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'transcriptR' as transcriptR_1.18.0.zip * DONE (transcriptR)