Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:29:22 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the supraHex package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1815/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
supraHex 1.28.2 (landing page) Hai Fang
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: supraHex |
Version: 1.28.2 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings supraHex_1.28.2.tar.gz |
StartedAt: 2021-05-06 06:28:45 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 06:30:14 -0400 (Thu, 06 May 2021) |
EllapsedTime: 89.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: supraHex.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings supraHex_1.28.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/supraHex.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘supraHex/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘supraHex’ version ‘1.28.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘supraHex’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘supraHex’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
name | user | system | elapsed | |
sBMH | 0.052 | 0.004 | 0.056 | |
sCompReorder | 3.456 | 0.032 | 3.496 | |
sDistance | 0.448 | 0.000 | 0.447 | |
sDmat | 0.564 | 0.000 | 0.566 | |
sDmatCluster | 0.600 | 0.000 | 0.601 | |
sDmatMinima | 0.680 | 0.000 | 0.684 | |
sHexDist | 0.012 | 0.000 | 0.011 | |
sHexGrid | 0.008 | 0.000 | 0.009 | |
sHexGridVariant | 0.000 | 0.004 | 0.003 | |
sHexPolygon | 0.168 | 0.000 | 0.168 | |
sInitial | 0.004 | 0.000 | 0.007 | |
sMapOverlay | 0.584 | 0.004 | 0.590 | |
sNeighAny | 0.016 | 0.000 | 0.016 | |
sNeighDirect | 0.012 | 0.000 | 0.011 | |
sPipeline | 0.000 | 0.000 | 0.001 | |
sTopology | 0.060 | 0.004 | 0.064 | |
sTrainBatch | 0.060 | 0.000 | 0.061 | |
sTrainSeq | 0.644 | 0.000 | 0.645 | |
sTrainology | 0.012 | 0.000 | 0.010 | |
sWriteData | 0.796 | 0.008 | 0.802 | |
visColoralpha | 0.004 | 0.000 | 0.006 | |
visColorbar | 0.036 | 0.000 | 0.039 | |
visColormap | 0.008 | 0.000 | 0.005 | |
visCompReorder | 4.508 | 0.020 | 4.533 | |
visDmatCluster | 0 | 0 | 0 | |
visDmatHeatmap | 0 | 0 | 0 | |
visHeatmap | 0.164 | 0.008 | 0.171 | |
visHeatmapAdv | 0.708 | 0.004 | 0.712 | |
visHexAnimate | 0.004 | 0.000 | 0.002 | |
visHexBarplot | 1.532 | 0.020 | 1.555 | |
visHexComp | 0.636 | 0.000 | 0.634 | |
visHexGrid | 0.680 | 0.000 | 0.681 | |
visHexMapping | 2.056 | 0.008 | 2.068 | |
visHexMulComp | 2.140 | 0.024 | 2.171 | |
visHexPattern | 2.824 | 0.036 | 2.863 | |
visKernels | 0.020 | 0.000 | 0.019 | |
visTreeBSclust | 0.000 | 0.000 | 0.001 | |
visTreeBootstrap | 0 | 0 | 0 | |
visVp | 0.020 | 0.004 | 0.025 | |