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This page was generated on 2021-05-06 12:33:39 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the sincell package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1722/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
sincell 1.22.0 (landing page) Miguel Julia
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: sincell |
Version: 1.22.0 |
Command: rm -rf sincell.buildbin-libdir && mkdir sincell.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sincell.buildbin-libdir sincell_1.22.0.tar.gz |
StartedAt: 2021-05-06 10:08:20 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 10:09:18 -0400 (Thu, 06 May 2021) |
EllapsedTime: 58.9 seconds |
RetCode: 0 |
Status: OK |
PackageFile: sincell_1.22.0.zip |
PackageFileSize: 1.707 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf sincell.buildbin-libdir && mkdir sincell.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sincell.buildbin-libdir sincell_1.22.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'sincell' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pseudoreplicatesbymodel.cpp -o pseudoreplicatesbymodel.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pseudoreplicatesbynoise.cpp -o pseudoreplicatesbynoise.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pseudoreplicatesbynoise_cv2.cpp -o pseudoreplicatesbynoise_cv2.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sstalgorithm.cpp -o sstalgorithm.o sstalgorithm.cpp: In function 'Rcpp::NumericVector sstalgorithm(Rcpp::NumericVector, int, Rcpp::NumericMatrix)': sstalgorithm.cpp:28:10: warning: 'disty' may be used uninitialized in this function [-Wmaybe-uninitialized] out[2] = disty; sstalgorithm.cpp:27:10: warning: 'distx' may be used uninitialized in this function [-Wmaybe-uninitialized] out[1] = distx; C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sincell.dll tmp.def RcppExports.o pseudoreplicatesbymodel.o pseudoreplicatesbynoise.o pseudoreplicatesbynoise_cv2.o sstalgorithm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/sincell.buildbin-libdir/00LOCK-sincell/00new/sincell/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sincell' finding HTML links ... done ExpressionMatrix html f_distance2vector html geneset.list html knnalgorithm html pseudoreplicatesbymodel html pseudoreplicatesbynoise html pseudoreplicatesbynoise_cv2 html sc_AssociationOfCellsHierarchyWithAGeneSet html sc_ComparissonOfGraphs html sc_DimensionalityReductionObj html sc_GraphBuilderObj html sc_InSilicoCellsReplicatesObj html sc_InitializingSincellObject html sc_StatisticalSupportByGeneSubsampling html sc_StatisticalSupportByReplacementWithInSilicoCellsReplicates html sc_clusterObj html sc_distanceObj html sc_marker2color html sstalgorithm html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'sincell' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pseudoreplicatesbymodel.cpp -o pseudoreplicatesbymodel.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pseudoreplicatesbynoise.cpp -o pseudoreplicatesbynoise.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pseudoreplicatesbynoise_cv2.cpp -o pseudoreplicatesbynoise_cv2.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sstalgorithm.cpp -o sstalgorithm.o sstalgorithm.cpp: In function 'Rcpp::NumericVector sstalgorithm(Rcpp::NumericVector, int, Rcpp::NumericMatrix)': sstalgorithm.cpp:28:10: warning: 'disty' may be used uninitialized in this function [-Wmaybe-uninitialized] out[2] = disty; sstalgorithm.cpp:27:10: warning: 'distx' may be used uninitialized in this function [-Wmaybe-uninitialized] out[1] = distx; C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sincell.dll tmp.def RcppExports.o pseudoreplicatesbymodel.o pseudoreplicatesbynoise.o pseudoreplicatesbynoise_cv2.o sstalgorithm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/sincell.buildbin-libdir/sincell/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'sincell' as sincell_1.22.0.zip * DONE (sincell)