Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:37 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the signatureSearch package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1706/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
signatureSearch 1.4.6 (landing page) Yuzhu Duan
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: signatureSearch |
Version: 1.4.6 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/signatureSearch_1.4.6.tar.gz && rm -rf signatureSearch.buildbin-libdir && mkdir signatureSearch.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=signatureSearch.buildbin-libdir signatureSearch_1.4.6.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL signatureSearch_1.4.6.zip && rm signatureSearch_1.4.6.tar.gz signatureSearch_1.4.6.zip |
StartedAt: 2021-05-05 19:04:53 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 19:06:59 -0400 (Wed, 05 May 2021) |
EllapsedTime: 126.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/signatureSearch_1.4.6.tar.gz && rm -rf signatureSearch.buildbin-libdir && mkdir signatureSearch.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=signatureSearch.buildbin-libdir signatureSearch_1.4.6.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL signatureSearch_1.4.6.zip && rm signatureSearch_1.4.6.tar.gz signatureSearch_1.4.6.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 4079k 100 4079k 0 0 42.2M 0 --:--:-- --:--:-- --:--:-- 42.8M install for i386 * installing *source* package 'signatureSearch' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fastGSEA.cpp -o fastGSEA.o fastGSEA.cpp: In function 'Rcpp::NumericVector calcGseaStatBatchCpp(const NumericVector&, const List&, const IntegerVector&)': fastGSEA.cpp:444:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int j = 0; j < S.size(); ++j) { ~~^~~~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fgsea_init.c -o fgsea_init.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o signatureSearch.dll tmp.def RcppExports.o fastGSEA.o fgsea_init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/signatureSearch.buildbin-libdir/00LOCK-signatureSearch/00new/signatureSearch/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'signatureSearch' finding HTML links ... done GCT-object html add_pcid html append2H5 html build_custom_db html calcGseaStatBatchCpp html cellNtestPlot html cell_info html chembl_moa_list html clue_moa_list html comp_fea_res html create_empty_h5 html dim-methods html drug_cell_ranks html drugs-methods html drugs10 html dsea_GSEA html dsea_hyperG html dtnetplot html enrichGO2 html enrichKEGG2 html enrichMOA html enrichReactome html feaResult-class html feaResult html gctx2h5 html gessResult-class html gessResult html gess_cmap html gess_cor html gess_fisher html gess_gcmap html gess_lincs html gess_res_vis html getALLEG html getDb html getSig html get_targets html get_treat_info html gmt2h5 html gseGO2 html gseKEGG2 html gseReactome html head-methods html lincs_expr_inst_info html lincs_pert_info html lincs_sig_info html mabsGO html mabsKEGG html mabsReactome html matrix2h5 html moa_conn html parse_gctx html qSig-class html qSig html rand_query_ES html read_gmt html result-methods html runWF html set_readable html show-methods html signatureSearch-package html sim_score_grp html tail-methods html tarReduce html targetList html tsea_dup_hyperG html tsea_mGSEA html tsea_mabs html vec_char_redu html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'signatureSearch' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fastGSEA.cpp -o fastGSEA.o fastGSEA.cpp: In function 'Rcpp::NumericVector calcGseaStatBatchCpp(const NumericVector&, const List&, const IntegerVector&)': fastGSEA.cpp:444:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for (int j = 0; j < S.size(); ++j) { ~~^~~~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fgsea_init.c -o fgsea_init.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o signatureSearch.dll tmp.def RcppExports.o fastGSEA.o fgsea_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/signatureSearch.buildbin-libdir/signatureSearch/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'signatureSearch' as signatureSearch_1.4.6.zip * DONE (signatureSearch) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'signatureSearch' successfully unpacked and MD5 sums checked