Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:29:01 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the scde package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1637/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scde 2.18.0 (landing page) Jean Fan
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: scde |
Version: 2.18.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL scde |
StartedAt: 2021-05-05 16:09:58 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 16:11:01 -0400 (Wed, 05 May 2021) |
EllapsedTime: 63.3 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL scde ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘scde’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c bwpca.cpp -o bwpca.o bwpca.cpp: In function ‘void set_random_matrix(arma::mat&, arma::mat&)’: bwpca.cpp:23:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j=0;j<target.n_rows;j++) { ~^~~~~~~~~~~~~~ bwpca.cpp:27:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0;i<target.n_cols;i++) { ~^~~~~~~~~~~~~~ bwpca.cpp:30:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j=0;j<target.n_rows;j++) { ~^~~~~~~~~~~~~~ bwpca.cpp: In function ‘void set_random_matrices(arma::mat&, arma::mat&, arma::mat&, arma::mat&)’: bwpca.cpp:40:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j=0;j<target1.n_rows;j++) { ~^~~~~~~~~~~~~~~ bwpca.cpp:44:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0;i<target1.n_cols;i++) { ~^~~~~~~~~~~~~~~ bwpca.cpp:47:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j=0;j<target1.n_rows;j++) { ~^~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c jpmatLogBoot.cpp -o jpmatLogBoot.o jpmatLogBoot.cpp: In function ‘SEXPREC* logBootPosterior(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: jpmatLogBoot.cpp:200:24: warning: unused variable ‘maxv’ [-Wunused-variable] double maxv=nbp.max(maxij); ^~~~ jpmatLogBoot.cpp: In function ‘SEXPREC* logBootBatchPosterior(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: jpmatLogBoot.cpp:443:10: warning: unused variable ‘maxv’ [-Wunused-variable] double maxv=nbp.max(maxij); ^~~~ g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c matSlideMult.cpp -o matSlideMult.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c pagoda.cpp -o pagoda.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o scde.so bwpca.o jpmatLogBoot.o matSlideMult.o pagoda.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.12-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-scde/00new/scde/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading Warning in .recacheSubclasses(def@className, def, env) : undefined subclass "numericVector" of class "Mnumeric"; definition not updated ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in .recacheSubclasses(def@className, def, env) : undefined subclass "numericVector" of class "Mnumeric"; definition not updated ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning in .recacheSubclasses(def@className, def, env) : undefined subclass "numericVector" of class "Mnumeric"; definition not updated ** testing if installed package keeps a record of temporary installation path * DONE (scde)