Joselyn Chavez
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/regutools |
| Branch: RELEASE_3_12 |
| Last Commit: 4c29caf |
| Last Changed Date: 2020-12-18 19:17:39 -0400 (Fri, 18 Dec 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:11 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the regutools package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1500/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| regutools 1.2.3 (landing page) Joselyn Chavez
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: regutools |
| Version: 1.2.3 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regutools.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings regutools_1.2.3.tar.gz |
| StartedAt: 2021-05-06 06:05:23 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 06:23:33 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 1090.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: regutools.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regutools.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings regutools_1.2.3.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/regutools.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'regutools/DESCRIPTION' ... OK
* this is package 'regutools' version '1.2.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'regutools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_dna_objects 14.41 0.34 15.06
regulondb 10.28 1.24 11.77
list_datasets 10.79 0.39 11.44
guess_id 9.14 1.20 10.62
list_attributes 9.38 0.94 10.55
get_dna_objects 9.40 0.83 11.64
get_regulatory_network 9.31 0.61 12.38
get_gene_synonyms 9.02 0.65 9.90
get_binding_sites 9.04 0.34 9.81
build_condition 7.79 1.16 9.73
convert_to_biostrings 8.15 0.78 16.36
get_regulatory_summary 8.17 0.49 8.92
connect_database 7.98 0.31 8.53
get_gene_regulators 7.47 0.77 8.71
get_dataset 7.32 0.36 7.92
convert_to_granges 7.11 0.33 7.70
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_dna_objects 11.16 0.22 11.61
convert_to_granges 7.91 0.36 8.50
build_condition 7.48 0.34 8.19
get_dna_objects 7.50 0.24 7.94
guess_id 7.03 0.36 7.61
convert_to_biostrings 6.91 0.36 7.51
connect_database 6.83 0.33 7.37
regulondb 6.83 0.23 7.40
get_binding_sites 6.77 0.20 7.61
get_regulatory_summary 6.67 0.27 7.15
get_dataset 6.59 0.25 7.06
get_gene_synonyms 6.46 0.27 6.95
get_regulatory_network 6.38 0.26 8.10
list_attributes 6.33 0.31 6.85
get_gene_regulators 6.24 0.34 6.81
list_datasets 6.34 0.17 6.83
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
regutools.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/regutools_1.2.3.tar.gz && rm -rf regutools.buildbin-libdir && mkdir regutools.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=regutools.buildbin-libdir regutools_1.2.3.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL regutools_1.2.3.zip && rm regutools_1.2.3.tar.gz regutools_1.2.3.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 493k 100 493k 0 0 4205k 0 --:--:-- --:--:-- --:--:-- 4258k
install for i386
* installing *source* package 'regutools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'regutools'
finding HTML links ... done
build_condition html
connect_database html
convert_to_biostrings html
convert_to_granges html
existing_intervals html
existing_partial_match html
get_binding_sites html
get_dataset html
get_dna_objects html
get_gene_regulators html
get_gene_synonyms html
get_regulatory_network html
get_regulatory_summary html
guess_id html
list_attributes html
list_datasets html
non_existing_intervals html
plot_dna_objects html
regulondb-class html
regulondb-methods html
regulondb html
regulondb_result-class html
regutools-package html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'regutools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'regutools' as regutools_1.2.3.zip
* DONE (regutools)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'regutools' successfully unpacked and MD5 sums checked
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regutools.Rcheck/tests_i386/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("regutools")
>
> test_check("regutools")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ]
Warning message:
call dbDisconnect() when finished working with a connection
>
> proc.time()
user system elapsed
146.18 8.98 165.04
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regutools.Rcheck/tests_x64/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("regutools")
>
> test_check("regutools")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ]
Warning message:
call dbDisconnect() when finished working with a connection
>
> proc.time()
user system elapsed
148.75 5.89 161.32
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regutools.Rcheck/examples_i386/regutools-Ex.timings
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regutools.Rcheck/examples_x64/regutools-Ex.timings
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