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BUILD BIN report for reb on merida1

This page was generated on 2021-05-06 12:36:21 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the reb package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1484/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
reb 1.68.0  (landing page)
Karl J. Dykema
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/reb
Branch: RELEASE_3_12
Last Commit: 25e1ca7
Last Changed Date: 2020-10-27 10:26:42 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    ERROR  
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: reb
Version: 1.68.0
Command: rm -rf reb.buildbin-libdir && mkdir reb.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh reb_1.68.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R reb.buildbin-libdir
StartedAt: 2021-05-06 09:44:18 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:45:15 -0400 (Thu, 06 May 2021)
EllapsedTime: 56.6 seconds
RetCode: 0
Status:   OK  
PackageFile: reb_1.68.0.tgz
PackageFileSize: 725 KiB

Command output

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### Running command:
###
###   rm -rf reb.buildbin-libdir && mkdir reb.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh reb_1.68.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R reb.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=reb.buildbin-libdir reb_1.68.0.tar.gz'
>>>>>>> 

* installing *source* package ‘reb’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c movbin.c -o movbin.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o reb.so movbin.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/reb.buildbin-libdir/00LOCK-reb/00new/reb/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'reb' is deprecated and will be removed from Bioconductor
  version 3.13
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: Package 'reb' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package keeps a record of temporary installation path
* DONE (reb)


>>>>>>> 
>>>>>>> FIXING LINKS FOR reb.buildbin-libdir/reb/libs/reb.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "reb.buildbin-libdir/reb/libs/reb.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "reb.buildbin-libdir/reb/libs/reb.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "reb.buildbin-libdir/reb/libs/reb.so"