Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

BUILD BIN report for rCGH on tokay1

This page was generated on 2021-05-06 12:33:08 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the rCGH package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1468/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rCGH 1.20.0  (landing page)
Frederic Commo
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/rCGH
Branch: RELEASE_3_12
Last Commit: 35225d2
Last Changed Date: 2020-10-27 11:06:33 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: rCGH
Version: 1.20.0
Command: rm -rf rCGH.buildbin-libdir && mkdir rCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rCGH.buildbin-libdir rCGH_1.20.0.tar.gz
StartedAt: 2021-05-06 09:53:11 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:54:25 -0400 (Thu, 06 May 2021)
EllapsedTime: 74.2 seconds
RetCode: 0
Status:   OK   
PackageFile: rCGH_1.20.0.zip
PackageFileSize: 4.921 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf rCGH.buildbin-libdir && mkdir rCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rCGH.buildbin-libdir rCGH_1.20.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'rCGH' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rCGH'
    finding HTML links ... done
    AllAccessors                            html  
    EMnormalize                             html  
    adjustSignal                            html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYhbpkj/R.INSTALL1f302e2d49dd/rCGH/man/adjustSignal.Rd:79: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
    agilentDB                               html  
    byGeneTable                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYhbpkj/R.INSTALL1f302e2d49dd/rCGH/man/byGeneTable.Rd:36: file link 'select' in package 'AnnotationDbi' does not exist and so has been treated as a topic
    hg18                                    html  
    hg19                                    html  
    hg38                                    html  
    multiplot                               html  
    plotDensity                             html  
    plotLOH                                 html  
    plotProfile                             html  
    rCGH-Agilent-class                      html  
    rCGH-SNP6-class                         html  
    rCGH-class                              html  
    rCGH-cytoScan-class                     html  
    rCGH-generic-class                      html  
    rCGH-oncoScan-class                     html  
    rCGH-package                            html  
    readAffyCytoScan                        html  
    readAffyOncoScan                        html  
    readAffySNP6                            html  
    readAgilent                             html  
    readGeneric                             html  
    recenter                                html  
    segmentCGH                              html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYhbpkj/R.INSTALL1f302e2d49dd/rCGH/man/segmentCGH.Rd:37: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYhbpkj/R.INSTALL1f302e2d49dd/rCGH/man/segmentCGH.Rd:69: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
    setInfo                                 html  
    show-methods                            html  
    view                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYhbpkj/R.INSTALL1f302e2d49dd/rCGH/man/view.Rd:9: file link 'shiny' in package 'shiny' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rCGH' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rCGH' as rCGH_1.20.0.zip
* DONE (rCGH)