Multiple platform build/check report for BioC 3.12 - CHECK report for projectR on tokay1

Package: projectR

Version: 1.6.0

Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:projectR.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings projectR_1.6.0.tar.gz

StartedAt: 2021-05-06 05:43:45 -0400 (Thu, 06 May 2021)

EndedAt: 2021-05-06 05:51:38 -0400 (Thu, 06 May 2021)

EllapsedTime: 473.0 seconds

RetCode: 0

Status: OK

CheckDir: projectR.Rcheck

Warnings: 0

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:projectR.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings projectR_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/projectR.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'projectR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'projectR' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .travis.yml
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'projectR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
alluvialMat: no visible binding for global variable 'celltype'
alluvialMat: no visible binding for global variable 'variable'
alluvialMat: no visible binding for global variable 'value'
alluvialMat: no visible binding for global variable 'nCells'
alluvialMat: no visible binding for global variable 'nCells_per_type'
alluvialMat: no visible binding for global variable
  'nCells_per_pattern'
alluvialMat: no visible binding for global variable 'prop'
Undefined global functions or variables:
  celltype nCells nCells_per_pattern nCells_per_type prop value
  variable
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
projectR-methods 50.05      0   50.05
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
projectR-methods 43.33   0.01   43.36
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.12-bioc/meat/projectR.Rcheck/00check.log'
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/projectR_1.6.0.tar.gz && rm -rf projectR.buildbin-libdir && mkdir projectR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=projectR.buildbin-libdir projectR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL projectR_1.6.0.zip && rm projectR_1.6.0.tar.gz projectR_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  871k  100  871k    0     0  30.9M      0 --:--:-- --:--:-- --:--:-- 32.7M

install for i386

* installing *source* package 'projectR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'projectR'
    finding HTML links ... done
    AP.RNAseq6l3c3t                         html  
    alluvialMat                             html  
    aucMat                                  html  
    cluster2pattern-methods                 html  
    clusterPlotR-methods                    html  
    correlateR-class                        html  
    correlateR                              html  
    geneMatchR                              html  
    initialize-correlateR-method            html  
    initialize-rotatoR-method               html  
    intersectoR-methods                     html  
    map.ESepiGen4c1l                        html  
    map.RNAseq6l3c3t                        html  
    p.ESepiGen4c1l                          html  
    p.RNAseq6l3c3t                          html  
    pd.ESepiGen4c1l                         html  
    pd.RNAseq6l3c3t                         html  
    projectR-methods                        html  
    rotatoR-class                           html  
    rotatoR                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'projectR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'projectR' as projectR_1.6.0.zip
* DONE (projectR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'projectR' successfully unpacked and MD5 sums checked


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(projectR)
> 
> test_check("projectR")

This is CoGAPS version 3.10.0 
Running Standard CoGAPS on p.RNAseq6l3c3t (108 genes and 54 samples) with parameters:

-- Standard Parameters --
nPatterns            5 
nIterations          50000 
seed                 350 
sparseOptimization   FALSE 

-- Sparsity Parameters --
alpha          0.01 
maxGibbsMass   100 

Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
1000 of 50000, Atoms: 220(A), 111(P), ChiSq: 50104, Time: 00:00:00 / 00:00:00
2000 of 50000, Atoms: 260(A), 155(P), ChiSq: 37914, Time: 00:00:00 / 00:00:00
3000 of 50000, Atoms: 293(A), 177(P), ChiSq: 34780, Time: 00:00:01 / 00:00:50
4000 of 50000, Atoms: 293(A), 173(P), ChiSq: 33075, Time: 00:00:02 / 00:01:12
5000 of 50000, Atoms: 320(A), 177(P), ChiSq: 32271, Time: 00:00:02 / 00:00:55
6000 of 50000, Atoms: 381(A), 198(P), ChiSq: 30146, Time: 00:00:03 / 00:01:08
7000 of 50000, Atoms: 366(A), 199(P), ChiSq: 30084, Time: 00:00:03 / 00:00:57
8000 of 50000, Atoms: 398(A), 205(P), ChiSq: 29739, Time: 00:00:04 / 00:01:05
9000 of 50000, Atoms: 397(A), 208(P), ChiSq: 29796, Time: 00:00:05 / 00:01:12
10000 of 50000, Atoms: 425(A), 205(P), ChiSq: 29525, Time: 00:00:05 / 00:01:04
11000 of 50000, Atoms: 412(A), 203(P), ChiSq: 29096, Time: 00:00:06 / 00:01:09
12000 of 50000, Atoms: 423(A), 222(P), ChiSq: 29139, Time: 00:00:07 / 00:01:13
13000 of 50000, Atoms: 421(A), 217(P), ChiSq: 28973, Time: 00:00:07 / 00:01:06
14000 of 50000, Atoms: 409(A), 234(P), ChiSq: 28831, Time: 00:00:08 / 00:01:10
15000 of 50000, Atoms: 410(A), 221(P), ChiSq: 28771, Time: 00:00:09 / 00:01:13
16000 of 50000, Atoms: 423(A), 225(P), ChiSq: 28593, Time: 00:00:10 / 00:01:15
17000 of 50000, Atoms: 444(A), 240(P), ChiSq: 28618, Time: 00:00:10 / 00:01:10
18000 of 50000, Atoms: 444(A), 222(P), ChiSq: 28514, Time: 00:00:11 / 00:01:13
19000 of 50000, Atoms: 444(A), 228(P), ChiSq: 28424, Time: 00:00:12 / 00:01:15
20000 of 50000, Atoms: 460(A), 231(P), ChiSq: 28490, Time: 00:00:12 / 00:01:10
21000 of 50000, Atoms: 454(A), 224(P), ChiSq: 28358, Time: 00:00:13 / 00:01:12
22000 of 50000, Atoms: 453(A), 228(P), ChiSq: 28377, Time: 00:00:13 / 00:01:09
23000 of 50000, Atoms: 485(A), 229(P), ChiSq: 28324, Time: 00:00:14 / 00:01:10
24000 of 50000, Atoms: 449(A), 235(P), ChiSq: 28369, Time: 00:00:14 / 00:01:07
25000 of 50000, Atoms: 480(A), 232(P), ChiSq: 28178, Time: 00:00:15 / 00:01:09
26000 of 50000, Atoms: 472(A), 257(P), ChiSq: 28181, Time: 00:00:15 / 00:01:06
27000 of 50000, Atoms: 479(A), 227(P), ChiSq: 28220, Time: 00:00:16 / 00:01:07
28000 of 50000, Atoms: 463(A), 238(P), ChiSq: 28198, Time: 00:00:16 / 00:01:05
29000 of 50000, Atoms: 474(A), 244(P), ChiSq: 28188, Time: 00:00:17 / 00:01:06
30000 of 50000, Atoms: 470(A), 230(P), ChiSq: 28296, Time: 00:00:17 / 00:01:03
31000 of 50000, Atoms: 481(A), 240(P), ChiSq: 28238, Time: 00:00:18 / 00:01:05
32000 of 50000, Atoms: 458(A), 229(P), ChiSq: 28279, Time: 00:00:18 / 00:01:03
33000 of 50000, Atoms: 452(A), 232(P), ChiSq: 28193, Time: 00:00:19 / 00:01:04
34000 of 50000, Atoms: 474(A), 245(P), ChiSq: 28231, Time: 00:00:19 / 00:01:02
35000 of 50000, Atoms: 464(A), 235(P), ChiSq: 28282, Time: 00:00:20 / 00:01:03
36000 of 50000, Atoms: 443(A), 245(P), ChiSq: 28282, Time: 00:00:20 / 00:01:01
37000 of 50000, Atoms: 443(A), 232(P), ChiSq: 28268, Time: 00:00:21 / 00:01:02
38000 of 50000, Atoms: 463(A), 220(P), ChiSq: 28290, Time: 00:00:22 / 00:01:03
39000 of 50000, Atoms: 465(A), 235(P), ChiSq: 28190, Time: 00:00:22 / 00:01:01
40000 of 50000, Atoms: 473(A), 235(P), ChiSq: 28245, Time: 00:00:23 / 00:01:02
41000 of 50000, Atoms: 457(A), 233(P), ChiSq: 28265, Time: 00:00:23 / 00:01:01
42000 of 50000, Atoms: 473(A), 235(P), ChiSq: 28234, Time: 00:00:24 / 00:01:02
43000 of 50000, Atoms: 449(A), 230(P), ChiSq: 28209, Time: 00:00:25 / 00:01:03
44000 of 50000, Atoms: 460(A), 218(P), ChiSq: 28296, Time: 00:00:25 / 00:01:01
45000 of 50000, Atoms: 477(A), 215(P), ChiSq: 28237, Time: 00:00:26 / 00:01:02
46000 of 50000, Atoms: 474(A), 226(P), ChiSq: 28242, Time: 00:00:27 / 00:01:03
47000 of 50000, Atoms: 458(A), 234(P), ChiSq: 28166, Time: 00:00:28 / 00:01:04
48000 of 50000, Atoms: 480(A), 223(P), ChiSq: 28232, Time: 00:00:28 / 00:01:02
49000 of 50000, Atoms: 460(A), 218(P), ChiSq: 28238, Time: 00:00:29 / 00:01:03
50000 of 50000, Atoms: 471(A), 220(P), ChiSq: 28203, Time: 00:00:29 / 00:01:02
-- Sampling Phase --
1000 of 50000, Atoms: 452(A), 221(P), ChiSq: 28244, Time: 00:00:30 / 00:01:02
2000 of 50000, Atoms: 470(A), 236(P), ChiSq: 28217, Time: 00:00:30 / 00:01:01
3000 of 50000, Atoms: 456(A), 224(P), ChiSq: 28201, Time: 00:00:31 / 00:01:02
4000 of 50000, Atoms: 465(A), 228(P), ChiSq: 28227, Time: 00:00:31 / 00:01:00
5000 of 50000, Atoms: 475(A), 228(P), ChiSq: 28205, Time: 00:00:32 / 00:01:01
6000 of 50000, Atoms: 473(A), 234(P), ChiSq: 28241, Time: 00:00:33 / 00:01:02
7000 of 50000, Atoms: 458(A), 227(P), ChiSq: 28263, Time: 00:00:34 / 00:01:03
8000 of 50000, Atoms: 469(A), 229(P), ChiSq: 28236, Time: 00:00:34 / 00:01:01
9000 of 50000, Atoms: 468(A), 235(P), ChiSq: 28255, Time: 00:00:35 / 00:01:02
10000 of 50000, Atoms: 454(A), 237(P), ChiSq: 28243, Time: 00:00:35 / 00:01:01
11000 of 50000, Atoms: 445(A), 231(P), ChiSq: 28268, Time: 00:00:36 / 00:01:01
12000 of 50000, Atoms: 465(A), 225(P), ChiSq: 28263, Time: 00:00:37 / 00:01:02
13000 of 50000, Atoms: 468(A), 231(P), ChiSq: 28191, Time: 00:00:37 / 00:01:01
14000 of 50000, Atoms: 468(A), 241(P), ChiSq: 28265, Time: 00:00:38 / 00:01:02
15000 of 50000, Atoms: 448(A), 237(P), ChiSq: 28284, Time: 00:00:38 / 00:01:00
16000 of 50000, Atoms: 466(A), 237(P), ChiSq: 28232, Time: 00:00:39 / 00:01:01
17000 of 50000, Atoms: 470(A), 239(P), ChiSq: 28152, Time: 00:00:39 / 00:01:00
18000 of 50000, Atoms: 464(A), 241(P), ChiSq: 28272, Time: 00:00:40 / 00:01:01
19000 of 50000, Atoms: 460(A), 224(P), ChiSq: 28221, Time: 00:00:40 / 00:01:00
20000 of 50000, Atoms: 468(A), 232(P), ChiSq: 28237, Time: 00:00:41 / 00:01:00
21000 of 50000, Atoms: 473(A), 226(P), ChiSq: 28189, Time: 00:00:41 / 00:00:59
22000 of 50000, Atoms: 448(A), 242(P), ChiSq: 28255, Time: 00:00:42 / 00:01:00
23000 of 50000, Atoms: 486(A), 227(P), ChiSq: 28277, Time: 00:00:42 / 00:00:59
24000 of 50000, Atoms: 461(A), 231(P), ChiSq: 28264, Time: 00:00:43 / 00:00:59
25000 of 50000, Atoms: 464(A), 232(P), ChiSq: 28278, Time: 00:00:44 / 00:01:00
26000 of 50000, Atoms: 469(A), 234(P), ChiSq: 28210, Time: 00:00:45 / 00:01:00
27000 of 50000, Atoms: 473(A), 233(P), ChiSq: 28212, Time: 00:00:45 / 00:00:59
28000 of 50000, Atoms: 469(A), 231(P), ChiSq: 28230, Time: 00:00:46 / 00:01:00
29000 of 50000, Atoms: 464(A), 231(P), ChiSq: 28238, Time: 00:00:46 / 00:00:59
30000 of 50000, Atoms: 472(A), 226(P), ChiSq: 28308, Time: 00:00:47 / 00:01:00
31000 of 50000, Atoms: 461(A), 226(P), ChiSq: 28184, Time: 00:00:47 / 00:00:59
32000 of 50000, Atoms: 470(A), 243(P), ChiSq: 28265, Time: 00:00:48 / 00:00:59
33000 of 50000, Atoms: 465(A), 217(P), ChiSq: 28226, Time: 00:00:49 / 00:01:00
34000 of 50000, Atoms: 454(A), 222(P), ChiSq: 28265, Time: 00:00:49 / 00:00:59
35000 of 50000, Atoms: 469(A), 213(P), ChiSq: 28308, Time: 00:00:50 / 00:00:59
36000 of 50000, Atoms: 447(A), 220(P), ChiSq: 28293, Time: 00:00:50 / 00:00:58
37000 of 50000, Atoms: 474(A), 235(P), ChiSq: 28156, Time: 00:00:51 / 00:00:59
38000 of 50000, Atoms: 472(A), 235(P), ChiSq: 28327, Time: 00:00:51 / 00:00:58
39000 of 50000, Atoms: 462(A), 238(P), ChiSq: 28279, Time: 00:00:52 / 00:00:59
40000 of 50000, Atoms: 477(A), 237(P), ChiSq: 28267, Time: 00:00:52 / 00:00:58
41000 of 50000, Atoms: 460(A), 230(P), ChiSq: 28183, Time: 00:00:53 / 00:00:58
42000 of 50000, Atoms: 457(A), 233(P), ChiSq: 28274, Time: 00:00:53 / 00:00:58
43000 of 50000, Atoms: 474(A), 227(P), ChiSq: 28193, Time: 00:00:54 / 00:00:58
44000 of 50000, Atoms: 478(A), 236(P), ChiSq: 28269, Time: 00:00:55 / 00:00:58
45000 of 50000, Atoms: 476(A), 237(P), ChiSq: 28250, Time: 00:00:55 / 00:00:58
46000 of 50000, Atoms: 471(A), 217(P), ChiSq: 28201, Time: 00:00:56 / 00:00:58
47000 of 50000, Atoms: 471(A), 228(P), ChiSq: 28205, Time: 00:00:57 / 00:00:58
48000 of 50000, Atoms: 466(A), 228(P), ChiSq: 28157, Time: 00:00:57 / 00:00:58
49000 of 50000, Atoms: 478(A), 230(P), ChiSq: 28241, Time: 00:00:58 / 00:00:58
50000 of 50000, Atoms: 481(A), 243(P), ChiSq: 28208, Time: 00:00:59 / 00:00:59
[1] "93 row names matched between data and loadings"
[1] "Updated dimension of data: 93 9"
[1] "93 row names matched between data and loadings"
[1] "Updated dimension of data: 93 9"
[1] "93 row names matched between data and loadings"
[1] "Updated dimension of data: 93 9"
[ FAIL 0 | WARN 13 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  70.21    0.85   71.06


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(projectR)
> 
> test_check("projectR")

This is CoGAPS version 3.10.0 
Running Standard CoGAPS on p.RNAseq6l3c3t (108 genes and 54 samples) with parameters:

-- Standard Parameters --
nPatterns            5 
nIterations          50000 
seed                 929 
sparseOptimization   FALSE 

-- Sparsity Parameters --
alpha          0.01 
maxGibbsMass   100 

Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
1000 of 50000, Atoms: 212(A), 120(P), ChiSq: 51390, Time: 00:00:00 / 00:00:00
2000 of 50000, Atoms: 239(A), 164(P), ChiSq: 37274, Time: 00:00:00 / 00:00:00
3000 of 50000, Atoms: 294(A), 183(P), ChiSq: 34643, Time: 00:00:00 / 00:00:00
4000 of 50000, Atoms: 281(A), 189(P), ChiSq: 34023, Time: 00:00:01 / 00:00:36
5000 of 50000, Atoms: 292(A), 184(P), ChiSq: 32731, Time: 00:00:01 / 00:00:27
6000 of 50000, Atoms: 324(A), 205(P), ChiSq: 32166, Time: 00:00:01 / 00:00:22
7000 of 50000, Atoms: 339(A), 193(P), ChiSq: 30875, Time: 00:00:01 / 00:00:19
8000 of 50000, Atoms: 385(A), 193(P), ChiSq: 30159, Time: 00:00:02 / 00:00:32
9000 of 50000, Atoms: 396(A), 198(P), ChiSq: 29925, Time: 00:00:02 / 00:00:28
10000 of 50000, Atoms: 383(A), 209(P), ChiSq: 29792, Time: 00:00:02 / 00:00:25
11000 of 50000, Atoms: 390(A), 212(P), ChiSq: 29296, Time: 00:00:03 / 00:00:34
12000 of 50000, Atoms: 422(A), 203(P), ChiSq: 29093, Time: 00:00:03 / 00:00:31
13000 of 50000, Atoms: 415(A), 226(P), ChiSq: 28844, Time: 00:00:03 / 00:00:28
14000 of 50000, Atoms: 432(A), 222(P), ChiSq: 28672, Time: 00:00:04 / 00:00:35
15000 of 50000, Atoms: 432(A), 219(P), ChiSq: 28705, Time: 00:00:04 / 00:00:32
16000 of 50000, Atoms: 432(A), 231(P), ChiSq: 28690, Time: 00:00:05 / 00:00:37
17000 of 50000, Atoms: 438(A), 236(P), ChiSq: 28654, Time: 00:00:05 / 00:00:35
18000 of 50000, Atoms: 447(A), 224(P), ChiSq: 28539, Time: 00:00:05 / 00:00:33
19000 of 50000, Atoms: 448(A), 227(P), ChiSq: 28454, Time: 00:00:06 / 00:00:37
20000 of 50000, Atoms: 457(A), 217(P), ChiSq: 28411, Time: 00:00:06 / 00:00:35
21000 of 50000, Atoms: 467(A), 216(P), ChiSq: 28314, Time: 00:00:06 / 00:00:33
22000 of 50000, Atoms: 439(A), 228(P), ChiSq: 28300, Time: 00:00:07 / 00:00:37
23000 of 50000, Atoms: 459(A), 233(P), ChiSq: 28351, Time: 00:00:07 / 00:00:35
24000 of 50000, Atoms: 459(A), 223(P), ChiSq: 28246, Time: 00:00:07 / 00:00:33
25000 of 50000, Atoms: 495(A), 217(P), ChiSq: 28171, Time: 00:00:08 / 00:00:36
26000 of 50000, Atoms: 464(A), 232(P), ChiSq: 28134, Time: 00:00:08 / 00:00:35
27000 of 50000, Atoms: 489(A), 233(P), ChiSq: 28236, Time: 00:00:09 / 00:00:38
28000 of 50000, Atoms: 459(A), 221(P), ChiSq: 28143, Time: 00:00:09 / 00:00:36
29000 of 50000, Atoms: 487(A), 230(P), ChiSq: 28204, Time: 00:00:09 / 00:00:35
30000 of 50000, Atoms: 473(A), 238(P), ChiSq: 28227, Time: 00:00:10 / 00:00:37
31000 of 50000, Atoms: 469(A), 232(P), ChiSq: 28246, Time: 00:00:10 / 00:00:36
32000 of 50000, Atoms: 463(A), 235(P), ChiSq: 28214, Time: 00:00:10 / 00:00:35
33000 of 50000, Atoms: 463(A), 226(P), ChiSq: 28158, Time: 00:00:11 / 00:00:37
34000 of 50000, Atoms: 476(A), 232(P), ChiSq: 28150, Time: 00:00:11 / 00:00:36
35000 of 50000, Atoms: 470(A), 241(P), ChiSq: 28165, Time: 00:00:12 / 00:00:38
36000 of 50000, Atoms: 470(A), 228(P), ChiSq: 28220, Time: 00:00:12 / 00:00:36
37000 of 50000, Atoms: 490(A), 246(P), ChiSq: 28164, Time: 00:00:12 / 00:00:35
38000 of 50000, Atoms: 470(A), 236(P), ChiSq: 28245, Time: 00:00:13 / 00:00:37
39000 of 50000, Atoms: 483(A), 249(P), ChiSq: 28179, Time: 00:00:13 / 00:00:36
40000 of 50000, Atoms: 473(A), 232(P), ChiSq: 28194, Time: 00:00:13 / 00:00:35
41000 of 50000, Atoms: 481(A), 233(P), ChiSq: 28235, Time: 00:00:14 / 00:00:37
42000 of 50000, Atoms: 473(A), 234(P), ChiSq: 28160, Time: 00:00:14 / 00:00:36
43000 of 50000, Atoms: 470(A), 247(P), ChiSq: 28278, Time: 00:00:15 / 00:00:37
44000 of 50000, Atoms: 479(A), 234(P), ChiSq: 28218, Time: 00:00:15 / 00:00:36
45000 of 50000, Atoms: 467(A), 234(P), ChiSq: 28209, Time: 00:00:15 / 00:00:36
46000 of 50000, Atoms: 474(A), 240(P), ChiSq: 28176, Time: 00:00:16 / 00:00:37
47000 of 50000, Atoms: 484(A), 231(P), ChiSq: 28108, Time: 00:00:16 / 00:00:36
48000 of 50000, Atoms: 458(A), 237(P), ChiSq: 28217, Time: 00:00:16 / 00:00:35
49000 of 50000, Atoms: 456(A), 241(P), ChiSq: 28197, Time: 00:00:17 / 00:00:37
50000 of 50000, Atoms: 456(A), 226(P), ChiSq: 28175, Time: 00:00:17 / 00:00:36
-- Sampling Phase --
1000 of 50000, Atoms: 491(A), 225(P), ChiSq: 28205, Time: 00:00:18 / 00:00:37
2000 of 50000, Atoms: 489(A), 225(P), ChiSq: 28210, Time: 00:00:18 / 00:00:36
3000 of 50000, Atoms: 486(A), 231(P), ChiSq: 28162, Time: 00:00:18 / 00:00:36
4000 of 50000, Atoms: 475(A), 239(P), ChiSq: 28220, Time: 00:00:19 / 00:00:37
5000 of 50000, Atoms: 461(A), 227(P), ChiSq: 28235, Time: 00:00:19 / 00:00:36
6000 of 50000, Atoms: 485(A), 229(P), ChiSq: 28193, Time: 00:00:20 / 00:00:37
7000 of 50000, Atoms: 485(A), 224(P), ChiSq: 28152, Time: 00:00:20 / 00:00:37
8000 of 50000, Atoms: 470(A), 225(P), ChiSq: 28180, Time: 00:00:20 / 00:00:36
9000 of 50000, Atoms: 490(A), 236(P), ChiSq: 28178, Time: 00:00:21 / 00:00:37
10000 of 50000, Atoms: 446(A), 241(P), ChiSq: 28232, Time: 00:00:21 / 00:00:36
11000 of 50000, Atoms: 461(A), 245(P), ChiSq: 28208, Time: 00:00:21 / 00:00:36
12000 of 50000, Atoms: 474(A), 230(P), ChiSq: 28208, Time: 00:00:22 / 00:00:37
13000 of 50000, Atoms: 453(A), 238(P), ChiSq: 28195, Time: 00:00:22 / 00:00:36
14000 of 50000, Atoms: 480(A), 236(P), ChiSq: 28207, Time: 00:00:23 / 00:00:37
15000 of 50000, Atoms: 475(A), 224(P), ChiSq: 28148, Time: 00:00:23 / 00:00:36
16000 of 50000, Atoms: 480(A), 225(P), ChiSq: 28209, Time: 00:00:23 / 00:00:36
17000 of 50000, Atoms: 471(A), 229(P), ChiSq: 28197, Time: 00:00:24 / 00:00:37
18000 of 50000, Atoms: 476(A), 234(P), ChiSq: 28206, Time: 00:00:24 / 00:00:36
19000 of 50000, Atoms: 457(A), 237(P), ChiSq: 28264, Time: 00:00:25 / 00:00:37
20000 of 50000, Atoms: 453(A), 241(P), ChiSq: 28217, Time: 00:00:25 / 00:00:36
21000 of 50000, Atoms: 473(A), 235(P), ChiSq: 28154, Time: 00:00:25 / 00:00:36
22000 of 50000, Atoms: 460(A), 231(P), ChiSq: 28145, Time: 00:00:26 / 00:00:37
23000 of 50000, Atoms: 467(A), 230(P), ChiSq: 28258, Time: 00:00:26 / 00:00:36
24000 of 50000, Atoms: 469(A), 229(P), ChiSq: 28206, Time: 00:00:26 / 00:00:36
25000 of 50000, Atoms: 468(A), 220(P), ChiSq: 28274, Time: 00:00:27 / 00:00:37
26000 of 50000, Atoms: 477(A), 233(P), ChiSq: 28193, Time: 00:00:27 / 00:00:36
27000 of 50000, Atoms: 486(A), 230(P), ChiSq: 28200, Time: 00:00:28 / 00:00:37
28000 of 50000, Atoms: 447(A), 238(P), ChiSq: 28269, Time: 00:00:28 / 00:00:36
29000 of 50000, Atoms: 486(A), 234(P), ChiSq: 28208, Time: 00:00:29 / 00:00:37
30000 of 50000, Atoms: 480(A), 244(P), ChiSq: 28213, Time: 00:00:29 / 00:00:37
31000 of 50000, Atoms: 499(A), 228(P), ChiSq: 28278, Time: 00:00:29 / 00:00:36
32000 of 50000, Atoms: 478(A), 238(P), ChiSq: 28157, Time: 00:00:30 / 00:00:37
33000 of 50000, Atoms: 474(A), 254(P), ChiSq: 28176, Time: 00:00:30 / 00:00:36
34000 of 50000, Atoms: 486(A), 258(P), ChiSq: 28164, Time: 00:00:31 / 00:00:37
35000 of 50000, Atoms: 467(A), 229(P), ChiSq: 28192, Time: 00:00:31 / 00:00:37
36000 of 50000, Atoms: 467(A), 244(P), ChiSq: 28190, Time: 00:00:31 / 00:00:36
37000 of 50000, Atoms: 459(A), 244(P), ChiSq: 28209, Time: 00:00:32 / 00:00:37
38000 of 50000, Atoms: 475(A), 242(P), ChiSq: 28197, Time: 00:00:32 / 00:00:36
39000 of 50000, Atoms: 472(A), 237(P), ChiSq: 28225, Time: 00:00:33 / 00:00:37
40000 of 50000, Atoms: 472(A), 242(P), ChiSq: 28216, Time: 00:00:33 / 00:00:37
41000 of 50000, Atoms: 474(A), 250(P), ChiSq: 28224, Time: 00:00:33 / 00:00:36
42000 of 50000, Atoms: 473(A), 246(P), ChiSq: 28237, Time: 00:00:34 / 00:00:37
43000 of 50000, Atoms: 477(A), 244(P), ChiSq: 28209, Time: 00:00:34 / 00:00:36
44000 of 50000, Atoms: 460(A), 245(P), ChiSq: 28190, Time: 00:00:35 / 00:00:37
45000 of 50000, Atoms: 471(A), 238(P), ChiSq: 28126, Time: 00:00:35 / 00:00:37
46000 of 50000, Atoms: 475(A), 240(P), ChiSq: 28206, Time: 00:00:35 / 00:00:36
47000 of 50000, Atoms: 461(A), 246(P), ChiSq: 28214, Time: 00:00:36 / 00:00:37
48000 of 50000, Atoms: 478(A), 234(P), ChiSq: 28177, Time: 00:00:36 / 00:00:36
49000 of 50000, Atoms: 463(A), 246(P), ChiSq: 28262, Time: 00:00:37 / 00:00:37
50000 of 50000, Atoms: 465(A), 239(P), ChiSq: 28205, Time: 00:00:37 / 00:00:37
[1] "93 row names matched between data and loadings"
[1] "Updated dimension of data: 93 9"
[1] "93 row names matched between data and loadings"
[1] "Updated dimension of data: 93 9"
[1] "93 row names matched between data and loadings"
[1] "Updated dimension of data: 93 9"
[ FAIL 0 | WARN 13 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  46.00    0.42   46.42

name	user	system	elapsed
alluvialMat	0.44	0.01	0.45
aucMat	0.06	0.00	0.06
cluster2pattern-methods	0.12	0.00	0.12
clusterPlotR-methods	0	0	0
correlateR	0.11	0.00	0.11
geneMatchR	0.05	0.00	0.05
intersectoR-methods	0.01	0.00	0.02
projectR-methods	50.05	0.00	50.05
rotatoR	0	0	0

name	user	system	elapsed
alluvialMat	0.67	0.02	0.69
aucMat	0.05	0.03	0.07
cluster2pattern-methods	1.05	0.00	1.05
clusterPlotR-methods	0	0	0
correlateR	0.2	0.0	0.2
geneMatchR	0.03	0.02	0.05
intersectoR-methods	0.04	0.00	0.03
projectR-methods	43.33	0.01	43.36
rotatoR	0	0	0

CHECK report for projectR on tokay1

Summary

Command output

Installation output

Tests output

Example timings