Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:36:11 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the proDA package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1391/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
proDA 1.4.0 (landing page) Constantin Ahlmann-Eltze
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: proDA |
Version: 1.4.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:proDA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings proDA_1.4.0.tar.gz |
StartedAt: 2021-05-06 04:54:24 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 04:59:52 -0400 (Thu, 06 May 2021) |
EllapsedTime: 327.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: proDA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:proDA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings proDA_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/proDA.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘proDA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘proDA’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘proDA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
proDA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL proDA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘proDA’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (proDA)
proDA.Rcheck/tests/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(proDA) > > test_check("proDA") ══ Skipped tests ═══════════════════════════════════════════════════════════════ • Very slow (1) [ FAIL 0 | WARN 0 | SKIP 1 | PASS 126 ] > > proc.time() user system elapsed 161.087 0.976 162.245
proDA.Rcheck/proDA-Ex.timings
name | user | system | elapsed | |
abundances | 1.598 | 0.077 | 1.675 | |
as_replicate | 0 | 0 | 0 | |
cash-proDAFit-method | 0.946 | 0.028 | 0.976 | |
coefficient_variance_matrices | 0.927 | 0.006 | 0.934 | |
coefficients | 0.897 | 0.005 | 0.903 | |
convergence | 0.897 | 0.002 | 0.900 | |
dist_approx | 1.502 | 0.005 | 1.508 | |
dist_approx_impl | 1.406 | 0.005 | 1.413 | |
feature_parameters | 1.027 | 0.003 | 1.031 | |
generate_synthetic_data | 0.041 | 0.002 | 0.043 | |
hyper_parameters | 0.942 | 0.002 | 0.945 | |
invprobit | 0.005 | 0.000 | 0.005 | |
median_normalization | 0.004 | 0.001 | 0.006 | |
mply_dbl | 0.006 | 0.001 | 0.007 | |
pd_lm | 0.014 | 0.001 | 0.016 | |
pd_row_t_test | 2.090 | 0.011 | 2.103 | |
proDA | 2.725 | 0.012 | 2.739 | |
reference_level | 0.844 | 0.002 | 0.848 | |
result_names | 0.929 | 0.001 | 0.930 | |
test_diff | 4.206 | 0.027 | 4.237 | |