##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/pepStat_1.24.0.tar.gz && rm -rf pepStat.buildbin-libdir && mkdir pepStat.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pepStat.buildbin-libdir pepStat_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL pepStat_1.24.0.zip && rm pepStat_1.24.0.tar.gz pepStat_1.24.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  395k  100  395k    0     0  22.8M      0 --:--:-- --:--:-- --:--:-- 24.1M

install for i386

* installing *source* package 'pepStat' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat'
No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat'
No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat'
No methods found in package 'IRanges' for request: 'values' when loading 'pepStat'
** help
*** installing help indices
  converting help for package 'pepStat'
    finding HTML links ... done
    baselineCorrect.pSet                    html  
    baseline_correct                        html  
    create_db                               html  
    finding level-2 HTML links ... done

    makeCalls                               html  
    makePeptideSet                          html  
    normalizeArray                          html  
    peptideSet-methods                      html  
    peptideSet                              html  
    plotArray                               html  
    restab                                  html  
    shinyPepStat                            html  
    slidingMean                             html  
    summarizePeptides                       html  
** building package indices
** installing vignettes
   'pepStat.Rnw' 
** testing if installed package can be loaded from temporary location
No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat'
No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat'
No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat'
No methods found in package 'IRanges' for request: 'values' when loading 'pepStat'
** testing if installed package can be loaded from final location
No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat'
No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat'
No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat'
No methods found in package 'IRanges' for request: 'values' when loading 'pepStat'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pepStat' ...
** testing if installed package can be loaded
No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat'
No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat'
No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat'
No methods found in package 'IRanges' for request: 'values' when loading 'pepStat'
* MD5 sums
packaged installation of 'pepStat' as pepStat_1.24.0.zip
* DONE (pepStat)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'pepStat' successfully unpacked and MD5 sums checked