Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:32:43 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the pdInfoBuilder package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1320/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
pdInfoBuilder 1.54.0 (landing page) Benilton Carvalho
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: pdInfoBuilder |
Version: 1.54.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/pdInfoBuilder_1.54.0.tar.gz && rm -rf pdInfoBuilder.buildbin-libdir && mkdir pdInfoBuilder.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pdInfoBuilder.buildbin-libdir pdInfoBuilder_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL pdInfoBuilder_1.54.0.zip && rm pdInfoBuilder_1.54.0.tar.gz pdInfoBuilder_1.54.0.zip |
StartedAt: 2021-05-05 17:47:22 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 17:48:32 -0400 (Wed, 05 May 2021) |
EllapsedTime: 69.4 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/pdInfoBuilder_1.54.0.tar.gz && rm -rf pdInfoBuilder.buildbin-libdir && mkdir pdInfoBuilder.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pdInfoBuilder.buildbin-libdir pdInfoBuilder_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL pdInfoBuilder_1.54.0.zip && rm pdInfoBuilder_1.54.0.tar.gz pdInfoBuilder_1.54.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 362k 100 362k 0 0 17.8M 0 --:--:-- --:--:-- --:--:-- 18.6M install for i386 * installing *source* package 'pdInfoBuilder' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pdInfoBuilder.c -o pdInfoBuilder.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o pdInfoBuilder.dll tmp.def pdInfoBuilder.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/pdInfoBuilder.buildbin-libdir/00LOCK-pdInfoBuilder/00new/pdInfoBuilder/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder' ** help *** installing help indices converting help for package 'pdInfoBuilder' finding HTML links ... done AffyClariomSPDInfoPkgSeed-class html AffyExpressionPDInfoPkgSeed-class html AffySNPCNVPDInfoPkgSeed-class html AffySNPCNVPDInfoPkgSeed2-class html AffySNPPDInfoPkgSeed-class html AffySNPPDInfoPkgSeed2-class html AffySTPDInfoPkgSeed-class html AffyTilingPDInfoPkgSeed-class html GenericArrayFunctions html NgsExpressionPDInfoPkgSeed-class html NgsTilingPDInfoPkgSeed-class html NimbleGenPDInfoPkgSeed-class html chipName html getGeometry html makePdInfoPackage html ** building package indices ** installing vignettes 'BuildingPDInfoPkgs.Rnw' 'howto-AffymetrixMapping.Rnw' ** testing if installed package can be loaded from temporary location No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder' ** testing if installed package can be loaded from final location No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'pdInfoBuilder' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pdInfoBuilder.c -o pdInfoBuilder.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o pdInfoBuilder.dll tmp.def pdInfoBuilder.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/x64 ** testing if installed package can be loaded No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder' * MD5 sums packaged installation of 'pdInfoBuilder' as pdInfoBuilder_1.54.0.zip * DONE (pdInfoBuilder) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'pdInfoBuilder' successfully unpacked and MD5 sums checked