Simon Gert Coetzee
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/motifbreakR |
| Branch: RELEASE_3_12 |
| Last Commit: b7ea7f4 |
| Last Changed Date: 2020-10-27 11:07:51 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:20 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the motifbreakR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1142/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| motifbreakR 2.4.0 (landing page) Simon Gert Coetzee
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: motifbreakR |
| Version: 2.4.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/motifbreakR_2.4.0.tar.gz && rm -rf motifbreakR.buildbin-libdir && mkdir motifbreakR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=motifbreakR.buildbin-libdir motifbreakR_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL motifbreakR_2.4.0.zip && rm motifbreakR_2.4.0.tar.gz motifbreakR_2.4.0.zip |
| StartedAt: 2021-05-05 18:30:04 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:32:17 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 133.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/motifbreakR_2.4.0.tar.gz && rm -rf motifbreakR.buildbin-libdir && mkdir motifbreakR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=motifbreakR.buildbin-libdir motifbreakR_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL motifbreakR_2.4.0.zip && rm motifbreakR_2.4.0.tar.gz motifbreakR_2.4.0.zip
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install for i386
* installing *source* package 'motifbreakR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
See system.file("LICENSE", package="MotifDb") for use restrictions.
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'motifStack::as.data.frame' when loading 'motifbreakR'
** help
*** installing help indices
converting help for package 'motifbreakR'
finding HTML links ... done
calculatePvalue html
finding level-2 HTML links ... done
encodemotif html
example.results html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpkRhrzo/R.INSTALL2498591546f8/motifbreakR/man/example.results.Rd:8: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpkRhrzo/R.INSTALL2498591546f8/motifbreakR/man/example.results.Rd:14: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
factorbook html
hocomoco html
homer html
motifbreakR html
motifbreakR_motif html
plotMB html
scoreAllWindows html
snps.from.file html
snps.from.rsid html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
See system.file("LICENSE", package="MotifDb") for use restrictions.
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'motifStack::as.data.frame' when loading 'motifbreakR'
** testing if installed package can be loaded from final location
See system.file("LICENSE", package="MotifDb") for use restrictions.
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'motifStack::as.data.frame' when loading 'motifbreakR'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'motifbreakR' ...
** testing if installed package can be loaded
See system.file("LICENSE", package="MotifDb") for use restrictions.
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'motifStack::as.data.frame' when loading 'motifbreakR'
* MD5 sums
packaged installation of 'motifbreakR' as motifbreakR_2.4.0.zip
* DONE (motifbreakR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'motifbreakR' successfully unpacked and MD5 sums checked