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BUILD report for messina on tokay1

This page was generated on 2021-05-06 12:32:11 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the messina package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1042/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
messina 1.26.0  (landing page)
Mark Pinese
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/messina
Branch: RELEASE_3_12
Last Commit: a628730
Last Changed Date: 2020-10-27 10:55:39 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    ERROR  skipped
tokay1Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: messina
Version: 1.26.0
Command: chmod a+r messina -R && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data messina
StartedAt: 2021-05-05 21:55:11 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 21:58:06 -0400 (Wed, 05 May 2021)
EllapsedTime: 174.1 seconds
RetCode: 1
Status:   ERROR   
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r messina -R && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data messina
###
##############################################################################
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* checking for file 'messina/DESCRIPTION' ... OK
* preparing 'messina':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'messina.Rnw' using knitr
Loading required package: survival
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
    pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which.max,
    which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

pdfcrop.exe: MiKTeX encountered an internal error.
pdfcrop.exe: MiKTeX encountered an internal error.
pdfcrop.exe: MiKTeX encountered an internal error.
pdfcrop.exe: MiKTeX encountered an internal error.
pdfcrop.exe: MiKTeX encountered an internal error.
pdfcrop.exe: MiKTeX encountered an internal error.
pdfcrop.exe: MiKTeX encountered an internal error.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "messina.tex" --max-iterations=20 -I "C:/Users/biocbuild/bbs-3.12-bioc/R/share/texmf/tex/latex" -I "C:/Users/biocbuild/bbs-3.12-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'messina.Rnw' failed with diagnostics:
running 'texi2dvi' on 'messina.tex' failed

LaTeX errors:
gnettes/messina.tex:19566:  ==> Fatal error occurred, no output PDF file produc
ed!

--- failed re-building 'messina.Rnw'

SUMMARY: processing the following file failed:
  'messina.Rnw'

Error: Vignette re-building failed.
Execution halted