Gustavo H. Esteves
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/maigesPack |
| Branch: RELEASE_3_12 |
| Last Commit: 5910e59 |
| Last Changed Date: 2020-10-27 10:32:10 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:06 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the maigesPack package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 992/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maigesPack 1.54.0 (landing page) Gustavo H. Esteves
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: maigesPack |
| Version: 1.54.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/maigesPack_1.54.0.tar.gz && rm -rf maigesPack.buildbin-libdir && mkdir maigesPack.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maigesPack.buildbin-libdir maigesPack_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL maigesPack_1.54.0.zip && rm maigesPack_1.54.0.tar.gz maigesPack_1.54.0.zip |
| StartedAt: 2021-05-05 17:07:09 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:07:50 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 41.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/maigesPack_1.54.0.tar.gz && rm -rf maigesPack.buildbin-libdir && mkdir maigesPack.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maigesPack.buildbin-libdir maigesPack_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL maigesPack_1.54.0.zip && rm maigesPack_1.54.0.tar.gz maigesPack_1.54.0.zip
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install for i386
* installing *source* package 'maigesPack' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Minfo.c -o Minfo.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bootstrapT.c -o bootstrapT.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register.c -o register.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c robustCorr.c -o robustCorr.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stats.c -o stats.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/maigesPack.buildbin-libdir/00LOCK-maigesPack/00new/maigesPack/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'maigesPack'
finding HTML links ... done
MI html
activeMod html
activeModScoreHTML html
activeNet html
activeNetScoreHTML html
addGeneGrps html
addPaths html
bootstrapCor html
bootstrapMI html
bootstrapT html
boxplot-methods html
bracketMethods html
calcA html
calcW html
classifyKNN html
classifyKNNsc html
classifyLDA html
classifyLDAsc html
classifySVM html
classifySVMsc html
coerce-methods html
compCorr html
contrastsFitM html
createMaigesRaw html
createTDMS html
deGenes2by2BootT html
deGenes2by2Ttest html
deGenes2by2Wilcox html
deGenesANOVA html
designANOVA html
dim-methods html
gastro html
getLabels html
heatmapsM html
hierM html
hierMde html
image-methods html
kmeansM html
kmeansMde html
loadData html
maiges-class html
maigesANOVA-class html
maigesActMod-class html
maigesActNet-class html
maigesClass-class html
maigesDE-class html
maigesDEcluster-class html
maigesPreRaw-class html
maigesRaw-class html
maigesRelNetB-class html
maigesRelNetM-class html
normLoc html
normOLIN html
normRepLoess html
normScaleLimma html
normScaleMarray html
plot-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpshJhyQ/R.INSTALL14d820fe689c/maigesPack/man/plot-methods.Rd:19: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpshJhyQ/R.INSTALL14d820fe689c/maigesPack/man/plot-methods.Rd:83: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpshJhyQ/R.INSTALL14d820fe689c/maigesPack/man/plot-methods.Rd:198: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
plotGenePair html
print-methods html
relNet2TGF html
relNetworkB html
relNetworkM html
robustCorr html
selSpots html
show-methods html
somM html
somMde html
summarizeReplicates html
summary-methods html
tableClass html
tablesDE html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'maigesPack' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Minfo.c -o Minfo.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bootstrapT.c -o bootstrapT.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register.c -o register.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c robustCorr.c -o robustCorr.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stats.c -o stats.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/maigesPack.buildbin-libdir/maigesPack/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'maigesPack' as maigesPack_1.54.0.zip
* DONE (maigesPack)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'maigesPack' successfully unpacked and MD5 sums checked