Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:35:30 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the loci2path package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 966/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
loci2path 1.10.0 (landing page) Tianlei Xu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: loci2path |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:loci2path.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings loci2path_1.10.0.tar.gz |
StartedAt: 2021-05-06 03:10:02 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 03:11:51 -0400 (Thu, 06 May 2021) |
EllapsedTime: 108.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: loci2path.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:loci2path.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings loci2path_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/loci2path.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘loci2path/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘loci2path’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘loci2path’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
loci2path.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL loci2path ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘loci2path’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (loci2path)
loci2path.Rcheck/loci2path-Ex.timings
name | user | system | elapsed | |
biocarta | 0.002 | 0.001 | 0.003 | |
check.geneid | 0.015 | 0.001 | 0.016 | |
eqtlSet-class | 0.239 | 0.011 | 0.251 | |
eset.list | 0.001 | 0.002 | 0.003 | |
geneSet-class | 0.015 | 0.003 | 0.020 | |
getHeatmap-methods | 0.545 | 0.028 | 0.575 | |
getMat-methods | 0.366 | 0.011 | 0.378 | |
getPathDescription-methods | 0.318 | 0.007 | 0.324 | |
getPval-methods | 0.274 | 0.011 | 0.286 | |
getTissueDegree-methods | 0.295 | 0.010 | 0.304 | |
getWordcloud-methods | 0.562 | 0.006 | 0.569 | |
loci2pathResult-class | 0.281 | 0.012 | 0.293 | |
query-methods | 0.420 | 0.006 | 0.427 | |
query.gr | 0.001 | 0.001 | 0.003 | |