Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:35:02 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the gcatest package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 668/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
gcatest 1.20.0 (landing page) Wei Hao
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: gcatest |
Version: 1.20.0 |
Command: rm -rf gcatest.buildbin-libdir && mkdir gcatest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gcatest_1.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gcatest.buildbin-libdir |
StartedAt: 2021-05-06 08:41:11 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 08:42:17 -0400 (Thu, 06 May 2021) |
EllapsedTime: 65.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: gcatest_1.20.0.tgz |
PackageFileSize: 3.323 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gcatest.buildbin-libdir && mkdir gcatest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gcatest_1.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gcatest.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gcatest.buildbin-libdir gcatest_1.20.0.tar.gz' >>>>>>> * installing *source* package ‘gcatest’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c assoc.c -o assoc.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c gcatest-init.c -o gcatest-init.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gcatest.so assoc.o gcatest-init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.12-bioc/meat/gcatest.buildbin-libdir/00LOCK-gcatest/00new/gcatest/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gcatest) >>>>>>> >>>>>>> FIXING LINKS FOR gcatest.buildbin-libdir/gcatest/libs/gcatest.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "gcatest.buildbin-libdir/gcatest/libs/gcatest.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "gcatest.buildbin-libdir/gcatest/libs/gcatest.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "gcatest.buildbin-libdir/gcatest/libs/gcatest.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "gcatest.buildbin-libdir/gcatest/libs/gcatest.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "gcatest.buildbin-libdir/gcatest/libs/gcatest.so"