Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:22 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the gaga package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 658/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
gaga 2.36.0 (landing page) David Rossell
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: gaga |
Version: 2.36.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/gaga_2.36.0.tar.gz && rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaga.buildbin-libdir gaga_2.36.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL gaga_2.36.0.zip && rm gaga_2.36.0.tar.gz gaga_2.36.0.zip |
StartedAt: 2021-05-05 17:00:14 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 17:00:51 -0400 (Wed, 05 May 2021) |
EllapsedTime: 36.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/gaga_2.36.0.tar.gz && rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaga.buildbin-libdir gaga_2.36.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL gaga_2.36.0.zip && rm gaga_2.36.0.tar.gz gaga_2.36.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 125k 100 125k 0 0 6757k 0 --:--:-- --:--:-- --:--:-- 7361k install for i386 * installing *source* package 'gaga' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cseqdesma.c -o cseqdesma.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cstat.c -o cstat.o cstat.c:22:19: warning: 'css_c_sccs_id' defined but not used [-Wunused-const-variable=] static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$"; ^~~~~~~~~~~~~ cstat.c:21:19: warning: 'vector_c_sccs_id' defined but not used [-Wunused-const-variable=] static const char vector_c_sccs_id[] = "%W%"; ^~~~~~~~~~~~~~~~ cstat.c:20:19: warning: 'nrutil_c_sccs_id' defined but not used [-Wunused-const-variable=] static const char nrutil_c_sccs_id[] = "%W%"; ^~~~~~~~~~~~~~~~ cstat.c:19:19: warning: 'mess_c_sccs_id' defined but not used [-Wunused-const-variable=] static const char mess_c_sccs_id[] = "%W%"; ^~~~~~~~~~~~~~ cstat.c:18:19: warning: 'interface_c_sccs_id' defined but not used [-Wunused-const-variable=] static const char interface_c_sccs_id[] = "%W%"; ^~~~~~~~~~~~~~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/gaga.buildbin-libdir/00LOCK-gaga/00new/gaga/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gaga' finding HTML links ... done buildPatterns html checkfit html classpred html dcgamma html findgenes html fitGG html forwsimDiffExpr html geneclus html getpar html parest html plotForwSim html posmeansGG html powclasspred html powfindgenes html print.gagaclus html print.gagafit html print.gagahyp html seqBoundariesGrid html simGG html simnewsamples html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'gaga' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cseqdesma.c -o cseqdesma.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cstat.c -o cstat.o cstat.c:22:19: warning: 'css_c_sccs_id' defined but not used [-Wunused-const-variable=] static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$"; ^~~~~~~~~~~~~ cstat.c:21:19: warning: 'vector_c_sccs_id' defined but not used [-Wunused-const-variable=] static const char vector_c_sccs_id[] = "%W%"; ^~~~~~~~~~~~~~~~ cstat.c:20:19: warning: 'nrutil_c_sccs_id' defined but not used [-Wunused-const-variable=] static const char nrutil_c_sccs_id[] = "%W%"; ^~~~~~~~~~~~~~~~ cstat.c:19:19: warning: 'mess_c_sccs_id' defined but not used [-Wunused-const-variable=] static const char mess_c_sccs_id[] = "%W%"; ^~~~~~~~~~~~~~ cstat.c:18:19: warning: 'interface_c_sccs_id' defined but not used [-Wunused-const-variable=] static const char interface_c_sccs_id[] = "%W%"; ^~~~~~~~~~~~~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/gaga.buildbin-libdir/gaga/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'gaga' as gaga_2.36.0.zip * DONE (gaga) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'gaga' successfully unpacked and MD5 sums checked