Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:20 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the flowType package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 637/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Nima Aghaeepour
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
Package: flowType |
Version: 2.28.0 |
Command: rm -rf flowType.buildbin-libdir && mkdir flowType.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowType.buildbin-libdir flowType_2.28.0.tar.gz |
StartedAt: 2021-05-06 09:06:00 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 09:07:21 -0400 (Thu, 06 May 2021) |
EllapsedTime: 81.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: flowType_2.28.0.zip |
PackageFileSize: 2.374 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf flowType.buildbin-libdir && mkdir flowType.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowType.buildbin-libdir flowType_2.28.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'flowType' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c countsAndMeans.cpp -o countsAndMeans.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowType.cpp -o flowType.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c numberGenerator.cpp -o numberGenerator.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowType.dll tmp.def countsAndMeans.o flowType.o numberGenerator.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/flowType.buildbin-libdir/00LOCK-flowType/00new/flowType/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'flowType' finding HTML links ... done DLBCLExample html HIVData html HIVMetaData html Phenotypes html calcMemUse html calcNumPops html decodePhenotype-methods html encodePhenotype html flowType-package html flowType html getLabels html plot html summary-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'flowType' is deprecated and will be removed from Bioconductor version 3.13 ** testing if installed package can be loaded from final location Warning: Package 'flowType' is deprecated and will be removed from Bioconductor version 3.13 ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'flowType' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c countsAndMeans.cpp -o countsAndMeans.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowType.cpp -o flowType.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c numberGenerator.cpp -o numberGenerator.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowType.dll tmp.def countsAndMeans.o flowType.o numberGenerator.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/flowType.buildbin-libdir/flowType/libs/x64 ** testing if installed package can be loaded Warning: Package 'flowType' is deprecated and will be removed from Bioconductor version 3.13 * MD5 sums packaged installation of 'flowType' as flowType_2.28.0.zip * DONE (flowType)