| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:20 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the flowType package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 637/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Nima Aghaeepour
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: flowType |
| Version: 2.28.0 |
| Command: rm -rf flowType.buildbin-libdir && mkdir flowType.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowType.buildbin-libdir flowType_2.28.0.tar.gz |
| StartedAt: 2021-05-06 09:06:00 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 09:07:21 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 81.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: flowType_2.28.0.zip |
| PackageFileSize: 2.374 MiB |
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### Running command:
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### rm -rf flowType.buildbin-libdir && mkdir flowType.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowType.buildbin-libdir flowType_2.28.0.tar.gz
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install for i386
* installing *source* package 'flowType' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c countsAndMeans.cpp -o countsAndMeans.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowType.cpp -o flowType.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c numberGenerator.cpp -o numberGenerator.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowType.dll tmp.def countsAndMeans.o flowType.o numberGenerator.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/flowType.buildbin-libdir/00LOCK-flowType/00new/flowType/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowType'
finding HTML links ... done
DLBCLExample html
HIVData html
HIVMetaData html
Phenotypes html
calcMemUse html
calcNumPops html
decodePhenotype-methods html
encodePhenotype html
flowType-package html
flowType html
getLabels html
plot html
summary-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'flowType' is deprecated and will be removed from Bioconductor
version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'flowType' is deprecated and will be removed from Bioconductor
version 3.13
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'flowType' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c countsAndMeans.cpp -o countsAndMeans.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowType.cpp -o flowType.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c numberGenerator.cpp -o numberGenerator.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowType.dll tmp.def countsAndMeans.o flowType.o numberGenerator.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/flowType.buildbin-libdir/flowType/libs/x64
** testing if installed package can be loaded
Warning: Package 'flowType' is deprecated and will be removed from Bioconductor
version 3.13
* MD5 sums
packaged installation of 'flowType' as flowType_2.28.0.zip
* DONE (flowType)