Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:20 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the flowStats package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 634/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowStats 4.2.0 (landing page) Greg Finak
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: flowStats |
Version: 4.2.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/flowStats_4.2.0.tar.gz && rm -rf flowStats.buildbin-libdir && mkdir flowStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowStats.buildbin-libdir flowStats_4.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL flowStats_4.2.0.zip && rm flowStats_4.2.0.tar.gz flowStats_4.2.0.zip |
StartedAt: 2021-05-05 19:13:52 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 19:15:31 -0400 (Wed, 05 May 2021) |
EllapsedTime: 99.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/flowStats_4.2.0.tar.gz && rm -rf flowStats.buildbin-libdir && mkdir flowStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowStats.buildbin-libdir flowStats_4.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL flowStats_4.2.0.zip && rm flowStats_4.2.0.tar.gz flowStats_4.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1519k 100 1519k 0 0 44.7M 0 --:--:-- --:--:-- --:--:-- 46.3M install for i386 * installing *source* package 'flowStats' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'flowStats' finding HTML links ... done BackGating html ITN html addName-methods html autoGate html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/autoGate.Rd:21: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/autoGate.Rd:25: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/autoGate.Rd:54: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic binByRef html calcPBChiSquare html calcPearsonChi html curv1Filter-class html finding level-2 HTML links ... done curv2Filter-class html curvPeaks html density1d html fdPar html flowStats-package html gate_singlet html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/gate_singlet.Rd:65: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic gaussNorm html gpaSet html iProcrustes html idFeaturesByBackgating html landmarkMatrix html lymphGate html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/lymphGate.Rd:79: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/lymphGate.Rd:83: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/lymphGate.Rd:133: file link 'ellipsoidGate' in package 'flowCore' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/lymphGate.Rd:141: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic norm2Filter-class html normQA html normalize html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/normalize.Rd:58: file link 'ncdfFlowSet' in package 'ncdfFlow' does not exist and so has been treated as a topic overton_like html plotBins html proBin html quadrantGate html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/quadrantGate.Rd:71: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/quadrantGate.Rd:79: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic rangeGate html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/rangeGate.Rd:135: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/rangeGate.Rd:145: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic spillover-flowSet html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeCKKjZ/R.INSTALL2eec25b62f4b/flowStats/man/spillover-flowSet.Rd:41: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic spillover_match-flowSet html spillover_ng-flowSet html warpSet html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'flowStats' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'flowStats' as flowStats_4.2.0.zip * DONE (flowStats) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'flowStats' successfully unpacked and MD5 sums checked