Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:20 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the flowPloidy package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 628/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowPloidy 1.16.0 (landing page) Tyler Smith
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: flowPloidy |
Version: 1.16.0 |
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowPloidy.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings flowPloidy_1.16.0.tar.gz |
StartedAt: 2021-05-06 02:52:59 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 02:55:14 -0400 (Thu, 06 May 2021) |
EllapsedTime: 134.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: flowPloidy.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowPloidy.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings flowPloidy_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/flowPloidy.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'flowPloidy/DESCRIPTION' ... OK * this is package 'flowPloidy' version '1.16.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'flowPloidy' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed FlowHist 3.9 0.12 7.33 ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
flowPloidy.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/flowPloidy_1.16.0.tar.gz && rm -rf flowPloidy.buildbin-libdir && mkdir flowPloidy.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPloidy.buildbin-libdir flowPloidy_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL flowPloidy_1.16.0.zip && rm flowPloidy_1.16.0.tar.gz flowPloidy_1.16.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 7 1126k 7 84435 0 0 263k 0 0:00:04 --:--:-- 0:00:04 264k 100 1126k 100 1126k 0 0 2146k 0 --:--:-- --:--:-- --:--:-- 2145k install for i386 * installing *source* package 'flowPloidy' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'flowPloidy' finding HTML links ... done DebrisModels html FlowHist html finding level-2 HTML links ... done FlowStandards html ModelComponent html browseFlowHist html fhAccessors html fhAnalyze html fhDoCV html fhDoCounts html fhDoNLS html fhDoRCS html fhModels html fhStart html findPeaks html flowPloidy html gauss html pickInit html plot.FlowHist html plotFH html resetFlowHist html setBins html setGate html tabulateFlowHist html updateFlowHist html viewFlowChannels html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'flowPloidy' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'flowPloidy' as flowPloidy_1.16.0.zip * DONE (flowPloidy) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'flowPloidy' successfully unpacked and MD5 sums checked
flowPloidy.Rcheck/tests_i386/testthat.Rout R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(flowPloidy) > > test_check("flowPloidy") FlowHist object '188-15.LMD' channel: FL3.INT.LIN 2 samples bins: 256 linearity: variable debris: SC 7 model components: a1, a2, a_s, b1, b_s, SC, AG 12 parameters: a1P, a_mean, a_stddev, a2P, linearity, a_sP, b1P, b_mean, b_stddev, b_sP, SCaP, AP 5 special parameters: xx, SCvals, DBvals, TRvals, QDvals Model fit Analysis ======== Counts ------ a1_count a2_count a_s_count b1_count b_s_count 1442.99 336.58 0.00 2820.64 405.87 Peak Sizes ---------- a_mean b_mean 99.04 136.12 CVs --- a_CV b_CV 2.2 2.0 RCS: 1.589 FlowHist object '222.LMD' channel: FL3.INT.LIN 2 samples bins: 256 linearity: variable debris: SC 8 model components: a1, a2, a_s, b1, b2, b_s, SC, AG 13 parameters: a1P, a_mean, a_stddev, a2P, linearity, a_sP, b1P, b_mean, b_stddev, b2P, b_sP, SCaP, AP 5 special parameters: xx, SCvals, DBvals, TRvals, QDvals Model fitting not complete RCS: NA FlowHist object '240+S.LMD' channel: FL3.INT.LIN 2 samples bins: 256 linearity: variable debris: MC 7 model components: a1, a2, a_s, b1, b_s, MC, AG 13 parameters: a1P, a_mean, a_stddev, a2P, linearity, a_sP, b1P, b_mean, b_stddev, b_sP, MCaP, k, AP 5 special parameters: xx, MCvals, DBvals, TRvals, QDvals Model fit Analysis ======== Counts ------ a1_count a2_count a_s_count b1_count b_s_count 664.23 0.00 195.73 3269.65 0.00 Peak Sizes ---------- a_mean b_mean 77.10 160.79 CVs --- a_CV b_CV 4.8 7.7 RCS: 2.22 FlowHist object '08.328' channel: FL2.A 2 samples bins: 256 linearity: variable debris: SC 0 model components: 0 parameters: 0 special parameters: Model fitting not complete RCS: NA [ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ] > > proc.time() user system elapsed 4.37 0.21 4.59 |
flowPloidy.Rcheck/tests_x64/testthat.Rout R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(flowPloidy) > > test_check("flowPloidy") FlowHist object '188-15.LMD' channel: FL3.INT.LIN 2 samples bins: 256 linearity: variable debris: SC 7 model components: a1, a2, a_s, b1, b_s, SC, AG 12 parameters: a1P, a_mean, a_stddev, a2P, linearity, a_sP, b1P, b_mean, b_stddev, b_sP, SCaP, AP 5 special parameters: xx, SCvals, DBvals, TRvals, QDvals Model fit Analysis ======== Counts ------ a1_count a2_count a_s_count b1_count b_s_count 1442.99 336.58 0.00 2820.64 405.87 Peak Sizes ---------- a_mean b_mean 99.04 136.12 CVs --- a_CV b_CV 2.2 2.0 RCS: 1.589 FlowHist object '222.LMD' channel: FL3.INT.LIN 2 samples bins: 256 linearity: variable debris: SC 8 model components: a1, a2, a_s, b1, b2, b_s, SC, AG 13 parameters: a1P, a_mean, a_stddev, a2P, linearity, a_sP, b1P, b_mean, b_stddev, b2P, b_sP, SCaP, AP 5 special parameters: xx, SCvals, DBvals, TRvals, QDvals Model fitting not complete RCS: NA FlowHist object '240+S.LMD' channel: FL3.INT.LIN 2 samples bins: 256 linearity: variable debris: MC 7 model components: a1, a2, a_s, b1, b_s, MC, AG 13 parameters: a1P, a_mean, a_stddev, a2P, linearity, a_sP, b1P, b_mean, b_stddev, b_sP, MCaP, k, AP 5 special parameters: xx, MCvals, DBvals, TRvals, QDvals Model fit Analysis ======== Counts ------ a1_count a2_count a_s_count b1_count b_s_count 664.23 0.00 195.73 3269.65 0.00 Peak Sizes ---------- a_mean b_mean 77.10 160.79 CVs --- a_CV b_CV 4.8 7.7 RCS: 2.22 FlowHist object '08.328' channel: FL2.A 2 samples bins: 256 linearity: variable debris: SC 0 model components: 0 parameters: 0 special parameters: Model fitting not complete RCS: NA [ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ] > > proc.time() user system elapsed 5.34 0.23 5.57 |
flowPloidy.Rcheck/examples_i386/flowPloidy-Ex.timings
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flowPloidy.Rcheck/examples_x64/flowPloidy-Ex.timings
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