Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:27:30 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the erccdashboard package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 565/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
erccdashboard 1.24.0 (landing page) Sarah Munro
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: erccdashboard |
Version: 1.24.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:erccdashboard.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings erccdashboard_1.24.0.tar.gz |
StartedAt: 2021-05-06 01:22:25 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 01:23:28 -0400 (Thu, 06 May 2021) |
EllapsedTime: 62.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: erccdashboard.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:erccdashboard.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings erccdashboard_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/erccdashboard.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘erccdashboard/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘erccdashboard’ version ‘1.24.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘erccdashboard’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE dynRangePlot: no visible binding for global variable ‘value’ dynRangePlot: no visible binding for global variable ‘Rep’ saveERCCPlots: no visible global function definition for ‘par’ testDECount: no visible binding for global variable ‘Atrend’ testDECount: no visible binding for global variable ‘Dispersion’ testDECount: no visible binding for global variable ‘Ratio’ Undefined global functions or variables: Atrend Dispersion Ratio Rep par value Consider adding importFrom("graphics", "par") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed estLODR 7.252 0 7.272 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.12-bioc/meat/erccdashboard.Rcheck/00check.log’ for details.
erccdashboard.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL erccdashboard ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘erccdashboard’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (erccdashboard)
erccdashboard.Rcheck/erccdashboard-Ex.timings
name | user | system | elapsed | |
ERCC | 0.004 | 0.000 | 0.002 | |
SEQC.Example | 0.000 | 0.000 | 0.001 | |
annotLODR | 1.088 | 0.024 | 1.115 | |
dynRangePlot | 1.016 | 0.004 | 1.024 | |
erccROC | 1.056 | 0.008 | 1.065 | |
estLODR | 7.252 | 0.000 | 7.272 | |
est_r_m | 1.040 | 0.000 | 1.039 | |
geneExprTest | 0.780 | 0.000 | 0.779 | |
initDat | 0.160 | 0.000 | 0.162 | |
maSignal | 2.160 | 0.004 | 2.168 | |
runDashboard | 0 | 0 | 0 | |
saveERCCPlots | 0 | 0 | 0 | |