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INSTALL report for cogena on tokay1

This page was generated on 2021-05-06 12:30:26 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the cogena package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 351/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cogena 1.24.0  (landing page)
Zhilong Jia
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/cogena
Branch: RELEASE_3_12
Last Commit: d5339b0
Last Changed Date: 2020-10-27 11:04:27 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: cogena
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/cogena_1.24.0.tar.gz && rm -rf cogena.buildbin-libdir && mkdir cogena.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cogena.buildbin-libdir cogena_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cogena_1.24.0.zip && rm cogena_1.24.0.tar.gz cogena_1.24.0.zip
StartedAt: 2021-05-05 18:48:42 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:50:07 -0400 (Wed, 05 May 2021)
EllapsedTime: 84.8 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/cogena_1.24.0.tar.gz && rm -rf cogena.buildbin-libdir && mkdir cogena.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cogena.buildbin-libdir cogena_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cogena_1.24.0.zip && rm cogena_1.24.0.tar.gz cogena_1.24.0.zip
###
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100 4589k  100 4589k    0     0  66.1M      0 --:--:-- --:--:-- --:--:-- 65.9M

install for i386

* installing *source* package 'cogena' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'class::somgrid' by 'kohonen::somgrid' when loading 'cogena'
** help
*** installing help indices
  converting help for package 'cogena'
    finding HTML links ... done
    AllGeneSymbols                          html  
    DEexprs                                 html  
    PEI                                     html  
    Psoriasis                               html  
    clEnrich                                html  
    clEnrich_one                            html  
    clusterMethods                          html  
    coExp                                   html  
    cogena_class                            html  
    cogena_package                          html  
    corInCluster                            html  
    enrichment                              html  
    gene2set                                html  
    geneExpInCluster                        html  
    geneInCluster                           html  
    genecl_class                            html  
    geneclusters                            html  
    gmt2list                                html  
    gmtlist2file                            html  
    heatmap.3                               html  
    heatmapCluster                          html  
    heatmapCmap                             html  
    heatmapPEI                              html  
    mat                                     html  
    nClusters                               html  
    pClusters                               html  
    sampleLabel                             html  
    show                                    html  
    sota                                    html  
    summary                                 html  
    upDownGene                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'class::somgrid' by 'kohonen::somgrid' when loading 'cogena'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'class::somgrid' by 'kohonen::somgrid' when loading 'cogena'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cogena' ...
** testing if installed package can be loaded
Warning: replacing previous import 'class::somgrid' by 'kohonen::somgrid' when loading 'cogena'
* MD5 sums
packaged installation of 'cogena' as cogena_1.24.0.zip
* DONE (cogena)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'cogena' successfully unpacked and MD5 sums checked