Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:30:22 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the clustifyr package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 327/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
clustifyr 1.2.0 (landing page) Rui Fu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: clustifyr |
Version: 1.2.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/clustifyr_1.2.0.tar.gz && rm -rf clustifyr.buildbin-libdir && mkdir clustifyr.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=clustifyr.buildbin-libdir clustifyr_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL clustifyr_1.2.0.zip && rm clustifyr_1.2.0.tar.gz clustifyr_1.2.0.zip |
StartedAt: 2021-05-05 18:58:22 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 19:00:46 -0400 (Wed, 05 May 2021) |
EllapsedTime: 143.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/clustifyr_1.2.0.tar.gz && rm -rf clustifyr.buildbin-libdir && mkdir clustifyr.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=clustifyr.buildbin-libdir clustifyr_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL clustifyr_1.2.0.zip && rm clustifyr_1.2.0.tar.gz clustifyr_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2333k 100 2333k 0 0 26.8M 0 --:--:-- --:--:-- --:--:-- 27.1M install for i386 * installing *source* package 'clustifyr' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'clustifyr' finding HTML links ... done append_genes html assign_ident html average_clusters html binarize_expr html build_atlas html calc_similarity html calculate_pathway_gsea html call_consensus html call_to_metadata html cbmc_m html cbmc_ref html check_raw_counts html clustify html clustify_lists html clustify_nudge html clustifyr-package html clustifyr_methods html collapse_to_cluster html compare_lists html cor_to_call html cor_to_call_rank html cor_to_call_topn html cosine html downrefs html downsample_matrix html feature_select_PCA html file_marker_parse html find_rank_bias html gene_pct html gene_pct_markerm html get_best_match_matrix html get_best_str html get_common_elements html get_similarity html get_ucsc_reference html get_unique_column html get_vargenes html gmt_to_list html human_genes_10x html insert_meta_object html kl_divergence html marker_select html matrixize_markers html mouse_genes_10x html not_pretty_palette html object_data html object_loc_lookup html object_ref html overcluster html overcluster_test html parse_loc_object html pbmc_markers html pbmc_markers_M3Drop html pbmc_matrix_small html pbmc_meta html pbmc_vargenes html percent_clusters html permute_similarity html plot_best_call html plot_call html plot_cor html plot_cor_heatmap html plot_dims html plot_gene html plot_pathway_gsea html pos_neg_marker html pos_neg_select html pretty_palette html pretty_palette2 html pretty_palette_ramp_d html ref_feature_select html ref_marker_select html reverse_marker_matrix html run_gsea html s_small html s_small3 html sce_small html seurat_meta html seurat_ref html vector_similarity html write_meta html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'clustifyr' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'clustifyr' as clustifyr_1.2.0.zip * DONE (clustifyr) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'clustifyr' successfully unpacked and MD5 sums checked