Hannah Pliner
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/cicero |
| Branch: RELEASE_3_12 |
| Last Commit: ffa460e |
| Last Changed Date: 2020-12-08 07:26:19 -0400 (Tue, 08 Dec 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:30:15 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the cicero package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 303/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cicero 1.8.1 (landing page) Hannah Pliner
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: cicero |
| Version: 1.8.1 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/cicero_1.8.1.tar.gz && rm -rf cicero.buildbin-libdir && mkdir cicero.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cicero.buildbin-libdir cicero_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cicero_1.8.1.zip && rm cicero_1.8.1.tar.gz cicero_1.8.1.zip |
| StartedAt: 2021-05-05 18:32:13 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:34:21 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 128.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/cicero_1.8.1.tar.gz && rm -rf cicero.buildbin-libdir && mkdir cicero.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cicero.buildbin-libdir cicero_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cicero_1.8.1.zip && rm cicero_1.8.1.tar.gz cicero_1.8.1.zip
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install for i386
* installing *source* package 'cicero' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cicero'
finding HTML links ... done
aggregate_by_cell_bin html
aggregate_nearby_peaks html
annotate_cds_by_site html
assemble_connections html
build_gene_activity_matrix html
cell_data html
cicero-package html
cicero_data html
compare_connections html
df_for_coords html
estimate_distance_parameter html
find_overlapping_ccans html
find_overlapping_coordinates html
gene_annotation_sample html
generate_ccans html
generate_cicero_models html
human.hg19.genome html
make_atac_cds html
make_cicero_cds html
make_sparse_matrix html
normalize_gene_activities html
plot_accessibility_in_pseudotime html
plot_connections html
ranges_for_coords html
run_cicero html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cicero' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cicero' as cicero_1.8.1.zip
* DONE (cicero)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'cicero' successfully unpacked and MD5 sums checked