Jan Oosting
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/beadarraySNP |
| Branch: RELEASE_3_12 |
| Last Commit: 49500dd |
| Last Changed Date: 2020-10-27 10:29:26 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:29:59 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the beadarraySNP package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 135/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| beadarraySNP 1.56.0 (landing page) Jan Oosting
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: beadarraySNP |
| Version: 1.56.0 |
| Command: rm -rf beadarraySNP.buildbin-libdir && mkdir beadarraySNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=beadarraySNP.buildbin-libdir beadarraySNP_1.56.0.tar.gz |
| StartedAt: 2021-05-06 08:30:48 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 08:31:28 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 40.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: beadarraySNP_1.56.0.zip |
| PackageFileSize: 1.018 MiB |
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### Running command:
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### rm -rf beadarraySNP.buildbin-libdir && mkdir beadarraySNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=beadarraySNP.buildbin-libdir beadarraySNP_1.56.0.tar.gz
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install for i386
* installing *source* package 'beadarraySNP' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
In .recacheSubclasses(def@className, def, env) :
undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** help
*** installing help indices
converting help for package 'beadarraySNP'
finding HTML links ... done
BeadstudioQC html
CopynumberConversion html
Datasets html
GenomicReports html
GetBeadStudioSampleNames html
PolarTransforms html
QCIllumina-class html
Sample_Map2Samplesheet html
SnpSetSegments-class html
finding level-2 HTML links ... done
alterCN html
arrayType html
backgroundCorrect.SNP html
backgroundEstimate html
calculateLOH html
calculateQCarray html
class.SnpSetIllumina html
compareGenotypes html
createCNSummary html
dist.GT html
getDNAindex html
heterozygosity html
heterozygousSNPs html
interactiveCNselect html
normalizeBetweenAlleles.SNP html
normalizeBetweenSubsamples.SNP html
normalizeLoci.SNP html
normalizeWithinArrays.SNP html
pdfChromosomesSmoothCopyNumber html
pdfQC html
plotGoldenGate4OPA html
plotQC html
read.SnpSetIllumina html
removeLowQualityProbes html
removeLowQualitySamples html
renameOPA html
reportGenotypeSegmentation html
reportSamplePanelQC-methods html
segmentate html
setRealCN html
smoothed.intensity html
standardNormalization html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in .recacheSubclasses(def@className, def, env) :
undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package can be loaded from final location
Warning in .recacheSubclasses(def@className, def, env) :
undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'beadarraySNP' ...
** testing if installed package can be loaded
Warning in .recacheSubclasses(def@className, def, env) :
undefined subclass "numericVector" of class "Mnumeric"; definition not updated
* MD5 sums
packaged installation of 'beadarraySNP' as beadarraySNP_1.56.0.zip
* DONE (beadarraySNP)