Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:29:51 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the affyQCReport package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 35/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
affyQCReport 1.68.0 (landing page) Craig Parman
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: affyQCReport |
Version: 1.68.0 |
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:affyQCReport.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings affyQCReport_1.68.0.tar.gz |
StartedAt: 2021-05-06 00:21:32 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 00:24:47 -0400 (Thu, 06 May 2021) |
EllapsedTime: 194.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: affyQCReport.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:affyQCReport.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings affyQCReport_1.68.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/affyQCReport.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'affyQCReport/DESCRIPTION' ... OK * this is package 'affyQCReport' version '1.68.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'affyQCReport' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'affy' 'Biobase' 'lattice' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE borderQC1: warning in axis(1, label = ArrayIndex, at = seq(1 - 0.5, length(ArrayIndex) - 0.5), cex = 0.2): partial argument match of 'label' to 'labels' borderQC2: warning in axis(1, label = ArrayIndex, at = seq(1 - 0.5, length(ArrayIndex) - 0.5), cex = 0.2): partial argument match of 'label' to 'labels' correlationPlot: warning in axis(2, label = as.list(pretty(c, 10)), at = seq(0, 1, by = (1/(length(pretty(c, 10)) - 1)))): partial argument match of 'label' to 'labels' correlationPlot: warning in axis(4, label = as.list(attr(object@phenoData, which = "varLabels")[1:phenodepth]), at = seq(1 - 0.5, phenodepth - 0.5), las = 1): partial argument match of 'label' to 'labels' signalDist: warning in legend(((temppar$xaxp[2] - temppar$xaxp[1])/temppar$xaxp[3]) * (temppar$xaxp[3] - 1) + temppar$xaxp[1], temppar$yaxp[2], as.character(ArrayIndex), lt = 1:length(ArrayIndex), col = 1:length(ArrayIndex), cex = 0.5): partial argument match of 'lt' to 'lty' affyQAReport: no visible global function definition for 'shortPathName' Undefined global functions or variables: shortPathName Consider adding importFrom("utils", "shortPathName") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/affyQCReport.Rcheck/00check.log' for details.
affyQCReport.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/affyQCReport_1.68.0.tar.gz && rm -rf affyQCReport.buildbin-libdir && mkdir affyQCReport.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affyQCReport.buildbin-libdir affyQCReport_1.68.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL affyQCReport_1.68.0.zip && rm affyQCReport_1.68.0.tar.gz affyQCReport_1.68.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 27772 100 27772 0 0 1768k 0 --:--:-- --:--:-- --:--:-- 1937k install for i386 * installing *source* package 'affyQCReport' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'affyQCReport' finding HTML links ... done QCReport html affyQAReport html borderQC1 html borderQC2 html correlationPlot html signalDist html titlePage html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'affyQCReport' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'affyQCReport' as affyQCReport_1.68.0.zip * DONE (affyQCReport) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'affyQCReport' successfully unpacked and MD5 sums checked
affyQCReport.Rcheck/examples_i386/affyQCReport-Ex.timings
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affyQCReport.Rcheck/examples_x64/affyQCReport-Ex.timings
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