Peter Dimitrov
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/aCGH |
| Branch: RELEASE_3_12 |
| Last Commit: 91f41a3 |
| Last Changed Date: 2020-10-27 10:24:17 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:34:15 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the aCGH package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 13/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| aCGH 1.68.0 (landing page) Peter Dimitrov
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: aCGH |
| Version: 1.68.0 |
| Command: rm -rf aCGH.buildbin-libdir && mkdir aCGH.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh aCGH_1.68.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R aCGH.buildbin-libdir |
| StartedAt: 2021-05-06 07:49:40 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 07:50:09 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 29.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: aCGH_1.68.0.tgz |
| PackageFileSize: 2.387 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf aCGH.buildbin-libdir && mkdir aCGH.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh aCGH_1.68.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R aCGH.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=aCGH.buildbin-libdir aCGH_1.68.0.tar.gz' >>>>>>> * installing *source* package ‘aCGH’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSEDOUBLE -g3 -I/usr/local/include -fPIC -Wall -g -O2 -c hmm.cpp -o hmm.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o aCGH.so hmm.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.12-bioc/meat/aCGH.buildbin-libdir/00LOCK-aCGH/00new/aCGH/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aCGH) >>>>>>> >>>>>>> FIXING LINKS FOR aCGH.buildbin-libdir/aCGH/libs/aCGH.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "aCGH.buildbin-libdir/aCGH/libs/aCGH.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "aCGH.buildbin-libdir/aCGH/libs/aCGH.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "aCGH.buildbin-libdir/aCGH/libs/aCGH.so"