| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:26:41 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the a4Base package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| a4Base 1.38.0 (landing page) Laure Cougnaud
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: a4Base |
| Version: 1.38.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings a4Base_1.38.0.tar.gz |
| StartedAt: 2021-05-05 22:50:16 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 22:53:31 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 195.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: a4Base.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings a4Base_1.38.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/a4Base.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘a4Base/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘a4Base’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘JavaGD’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘a4Base’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
spectralMap 12.324 0.168 12.638
computeLogRatio 7.352 0.104 7.476
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.12-bioc/meat/a4Base.Rcheck/00check.log’
for details.
a4Base.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL a4Base ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘a4Base’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (a4Base)
a4Base.Rcheck/a4Base-Ex.timings
| name | user | system | elapsed | |
| a4palette | 0.040 | 0.004 | 0.042 | |
| addQuantilesColors | 2.640 | 0.072 | 2.743 | |
| boxPlot | 2.980 | 0.056 | 3.047 | |
| combineTwoExpressionSet | 0 | 0 | 0 | |
| computeLogRatio | 7.352 | 0.104 | 7.476 | |
| createExpressionSet | 0.056 | 0.000 | 0.057 | |
| filterVarInt | 2.416 | 0.048 | 2.466 | |
| heatmap.expressionSet | 0.004 | 0.000 | 0.001 | |
| histPvalue | 2.500 | 0.020 | 2.526 | |
| histpvalueplotter | 2.420 | 0.028 | 2.449 | |
| lassoReg | 2.364 | 0.024 | 2.391 | |
| logReg | 0 | 0 | 0 | |
| nlcvTT | 0 | 0 | 0 | |
| plot1gene | 2.328 | 0.032 | 2.388 | |
| plotComb2Samples | 2.740 | 0.032 | 2.776 | |
| plotCombMultSamples | 3.800 | 0.052 | 3.863 | |
| plotCombination2genes | 3.040 | 0.032 | 3.073 | |
| plotLogRatio | 4.636 | 0.020 | 4.659 | |
| probabilitiesPlot | 0.000 | 0.000 | 0.001 | |
| probe2gene | 1.540 | 0.012 | 1.557 | |
| profilesPlot | 1.804 | 0.040 | 1.844 | |
| propdegenescalculation | 2.040 | 0.032 | 2.077 | |
| replicates | 0.000 | 0.000 | 0.002 | |
| spectralMap | 12.324 | 0.168 | 12.638 | |
| tTest | 2.688 | 0.036 | 2.737 | |
| volcanoPlot | 3.204 | 0.028 | 3.236 | |