Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:26:41 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the a4Base package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
a4Base 1.38.0 (landing page) Laure Cougnaud
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: a4Base |
Version: 1.38.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings a4Base_1.38.0.tar.gz |
StartedAt: 2021-05-05 22:50:16 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 22:53:31 -0400 (Wed, 05 May 2021) |
EllapsedTime: 195.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: a4Base.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings a4Base_1.38.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/a4Base.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘a4Base/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘a4Base’ version ‘1.38.0’ * checking package namespace information ... OK * checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘JavaGD’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘a4Base’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed spectralMap 12.324 0.168 12.638 computeLogRatio 7.352 0.104 7.476 * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.12-bioc/meat/a4Base.Rcheck/00check.log’ for details.
a4Base.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL a4Base ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘a4Base’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (a4Base)
a4Base.Rcheck/a4Base-Ex.timings
name | user | system | elapsed | |
a4palette | 0.040 | 0.004 | 0.042 | |
addQuantilesColors | 2.640 | 0.072 | 2.743 | |
boxPlot | 2.980 | 0.056 | 3.047 | |
combineTwoExpressionSet | 0 | 0 | 0 | |
computeLogRatio | 7.352 | 0.104 | 7.476 | |
createExpressionSet | 0.056 | 0.000 | 0.057 | |
filterVarInt | 2.416 | 0.048 | 2.466 | |
heatmap.expressionSet | 0.004 | 0.000 | 0.001 | |
histPvalue | 2.500 | 0.020 | 2.526 | |
histpvalueplotter | 2.420 | 0.028 | 2.449 | |
lassoReg | 2.364 | 0.024 | 2.391 | |
logReg | 0 | 0 | 0 | |
nlcvTT | 0 | 0 | 0 | |
plot1gene | 2.328 | 0.032 | 2.388 | |
plotComb2Samples | 2.740 | 0.032 | 2.776 | |
plotCombMultSamples | 3.800 | 0.052 | 3.863 | |
plotCombination2genes | 3.040 | 0.032 | 3.073 | |
plotLogRatio | 4.636 | 0.020 | 4.659 | |
probabilitiesPlot | 0.000 | 0.000 | 0.001 | |
probe2gene | 1.540 | 0.012 | 1.557 | |
profilesPlot | 1.804 | 0.040 | 1.844 | |
propdegenescalculation | 2.040 | 0.032 | 2.077 | |
replicates | 0.000 | 0.000 | 0.002 | |
spectralMap | 12.324 | 0.168 | 12.638 | |
tTest | 2.688 | 0.036 | 2.737 | |
volcanoPlot | 3.204 | 0.028 | 3.236 | |