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INSTALL report for TxRegInfra on tokay1

This page was generated on 2021-05-06 12:34:06 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the TxRegInfra package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1917/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TxRegInfra 1.10.0  (landing page)
VJ Carey
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/TxRegInfra
Branch: RELEASE_3_12
Last Commit: 386b161
Last Changed Date: 2020-10-27 11:35:17 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    ERROR  skipped
tokay1Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: TxRegInfra
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/TxRegInfra_1.10.0.tar.gz && rm -rf TxRegInfra.buildbin-libdir && mkdir TxRegInfra.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TxRegInfra.buildbin-libdir TxRegInfra_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL TxRegInfra_1.10.0.zip && rm TxRegInfra_1.10.0.tar.gz TxRegInfra_1.10.0.zip
StartedAt: 2021-05-05 17:44:57 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:45:59 -0400 (Wed, 05 May 2021)
EllapsedTime: 61.9 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/TxRegInfra_1.10.0.tar.gz && rm -rf TxRegInfra.buildbin-libdir && mkdir TxRegInfra.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TxRegInfra.buildbin-libdir TxRegInfra_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL TxRegInfra_1.10.0.zip && rm TxRegInfra_1.10.0.tar.gz TxRegInfra_1.10.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  344k  100  344k    0     0  17.4M      0 --:--:-- --:--:-- --:--:-- 18.6M

install for i386

* installing *source* package 'TxRegInfra' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TxRegInfra'
    finding HTML links ... done
    RaggedMongoExpt                         html  
    URL_txregInAWS                          html  
    URL_txregLocal                          html  
    addsyms                                 html  
    basicColData                            html  
    basicFormatter                          html  
    demo_eQTL_granges                       html  
    demo_fimo_granges                       html  
    dgf_meta                                html  
    dnmeta                                  html  
    dnmetaApp                               html  
    getDocumentFields                       html  
    getFieldNames                           html  
    grConverter                             html  
    importBedToMongo                        html  
    listAllCollections                      html  
    makeAggregator                          html  
    makeColData                             html  
    makeGRConverterList                     html  
    oldbasicColData                         html  
    ragged41FP                              html  
    sbov                                    html  
    sbov_output_FP                          html  
    sbov_output_HS                          html  
    sbov_output_eQTL                        html  
    sbov_to_graphNEL                        html  
    txmodels                                html  
    txregCollections                        html  
    verifyHasMongoCmd                       html  
    verifyRunningMongodb                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'TxRegInfra' is deprecated and will be removed from
  Bioconductor version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'TxRegInfra' is deprecated and will be removed from
  Bioconductor version 3.13
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TxRegInfra' ...
** testing if installed package can be loaded
Warning: Package 'TxRegInfra' is deprecated and will be removed from
  Bioconductor version 3.13
* MD5 sums
packaged installation of 'TxRegInfra' as TxRegInfra_1.10.0.zip
* DONE (TxRegInfra)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'TxRegInfra' successfully unpacked and MD5 sums checked