Manuela Hummel
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/TEQC |
| Branch: RELEASE_3_12 |
| Last Commit: ec0c464 |
| Last Changed Date: 2020-10-27 10:39:44 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:56 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the TEQC package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1848/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TEQC 4.12.0 (landing page) Manuela Hummel
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: TEQC |
| Version: 4.12.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/TEQC_4.12.0.tar.gz && rm -rf TEQC.buildbin-libdir && mkdir TEQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TEQC.buildbin-libdir TEQC_4.12.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL TEQC_4.12.0.zip && rm TEQC_4.12.0.tar.gz TEQC_4.12.0.zip |
| StartedAt: 2021-05-05 17:16:05 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:16:47 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 42.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/TEQC_4.12.0.tar.gz && rm -rf TEQC.buildbin-libdir && mkdir TEQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TEQC.buildbin-libdir TEQC_4.12.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL TEQC_4.12.0.zip && rm TEQC_4.12.0.tar.gz TEQC_4.12.0.zip
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install for i386
* installing *source* package 'TEQC' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TEQC'
finding HTML links ... done
TEQCreport html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/TEQCreport.Rd:17: missing file link 'RangedData-class'
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/TEQCreport.Rd:19: missing file link 'RangedData-class'
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/TEQCreport.Rd:42: missing file link 'RangedData-class'
chrom.barplot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/chrom.barplot.Rd:9: missing file link 'RangedData-class'
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/chrom.barplot.Rd:13: missing file link 'RangedData-class'
coverage.GC html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/coverage.GC.Rd:12: missing file link 'RangedData-class'
coverage.correlation html
coverage.density html
coverage.hist html
coverage.plot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/coverage.plot.Rd:12: missing file link 'RangedData-class'
coverage.target html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/coverage.target.Rd:11: missing file link 'RangedData-class'
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/coverage.target.Rd:13: missing file link 'RangedData-class'
coverage.targetlength.plot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/coverage.targetlength.plot.Rd:13: missing file link 'RangedData-class'
coverage.uniformity html
covered.k html
duplicates.barplot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/duplicates.barplot.Rd:12: missing file link 'RangedData-class'
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/duplicates.barplot.Rd:16: missing file link 'RangedData-class'
fraction.reads.target html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/fraction.reads.target.Rd:12: missing file link 'RangedData-class'
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/fraction.reads.target.Rd:16: missing file link 'RangedData-class'
fraction.target html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/fraction.target.Rd:9: missing file link 'RangedData-class'
get.baits html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/get.baits.Rd:29: missing file link 'RangedData-class'
get.reads html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/get.reads.Rd:43: missing file link 'RangedData-class'
get.targets html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/get.targets.Rd:24: missing file link 'RangedData-class'
insert.size.hist html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/insert.size.hist.Rd:12: missing file link 'RangedData-class'
make.wigfiles html
multiTEQCreport html
reads2pairs html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/reads2pairs.Rd:12: missing file link 'RangedData-class'
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/reads2pairs.Rd:33: missing file link 'RangedData-class'
readsPerTarget html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/readsPerTarget.Rd:11: missing file link 'RangedData-class'
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2dq7nE/R.INSTALL18e8763a290f/TEQC/man/readsPerTarget.Rd:13: missing file link 'RangedData-class'
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TEQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TEQC' as TEQC_4.12.0.zip
* DONE (TEQC)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'TEQC' successfully unpacked and MD5 sums checked