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INSTALL report for StructuralVariantAnnotation on tokay1

This page was generated on 2021-05-06 12:33:51 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the StructuralVariantAnnotation package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1810/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
StructuralVariantAnnotation 1.6.0  (landing page)
Daniel Cameron
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/StructuralVariantAnnotation
Branch: RELEASE_3_12
Last Commit: e585636
Last Changed Date: 2020-10-27 11:46:27 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: StructuralVariantAnnotation
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/StructuralVariantAnnotation_1.6.0.tar.gz && rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL StructuralVariantAnnotation_1.6.0.zip && rm StructuralVariantAnnotation_1.6.0.tar.gz StructuralVariantAnnotation_1.6.0.zip
StartedAt: 2021-05-05 18:02:34 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:03:45 -0400 (Wed, 05 May 2021)
EllapsedTime: 70.5 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/StructuralVariantAnnotation_1.6.0.tar.gz && rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL StructuralVariantAnnotation_1.6.0.zip && rm StructuralVariantAnnotation_1.6.0.tar.gz StructuralVariantAnnotation_1.6.0.zip
###
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100  121k  100  121k    0     0  5595k      0 --:--:-- --:--:-- --:--:-- 5792k

install for i386

* installing *source* package 'StructuralVariantAnnotation' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'StructuralVariantAnnotation'
    finding HTML links ... done
    StructuralVariantAnnotation             html  
    align_breakpoints                       html  
    breakendRanges                          html  
    breakpointGRangesToVCF                  html  
    breakpointRanges                        html  
    breakpointgr2bedpe                      html  
    calculateReferenceHomology              html  
    countBreakpointOverlaps                 html  
    dot-constrict                           html  
    dot-isSymbolic                          html  
    dot-pairwiseLCPrefix                    html  
    dot-svLen                               html  
    dot-testfile                            html  
    dot-testrecord                          html  
    dot-toVcfBreakendNotationAlt            html  
    dot-unXStringSet                        html  
    elementExtract                          html  
    extractBreakpointSequence               html  
    extractReferenceSequence                html  
    findBreakpointOverlaps                  html  
    findInsDupOverlaps                      html  
    grapes-na-grapes                        html  
    grapes-null-grapes                      html  
    isStructural                            html  
    isSymbolic                              html  
    pairs2breakpointgr                      html  
    partner                                 html  
    simpleEventLength                       html  
    simpleEventType                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'StructuralVariantAnnotation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'StructuralVariantAnnotation' as StructuralVariantAnnotation_1.6.0.zip
* DONE (StructuralVariantAnnotation)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'StructuralVariantAnnotation' successfully unpacked and MD5 sums checked