Julian Gehring
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/SomaticSignatures |
| Branch: RELEASE_3_12 |
| Last Commit: 9d4bed6 |
| Last Changed Date: 2020-10-27 10:54:37 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:42 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the SomaticSignatures package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1751/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SomaticSignatures 2.26.0 (landing page) Julian Gehring
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SomaticSignatures |
| Version: 2.26.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SomaticSignatures_2.26.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.26.0.zip && rm SomaticSignatures_2.26.0.tar.gz SomaticSignatures_2.26.0.zip |
| StartedAt: 2021-05-05 18:59:17 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 19:00:54 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 96.4 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SomaticSignatures_2.26.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.26.0.zip && rm SomaticSignatures_2.26.0.tar.gz SomaticSignatures_2.26.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 128k 100 128k 0 0 2557k 0 --:--:-- --:--:-- --:--:-- 2621k
install for i386
* installing *source* package 'SomaticSignatures' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SomaticSignatures'
finding HTML links ... done
MutationalSignatures-class html
SomaticSignatures-package html
cluster-spetrum html
decomposition-functions html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpwdhs6h/R.INSTALL295c2baa5cb1/SomaticSignatures/man/decomposition-functions.Rd:75: file link 'NMF' in package 'NMF' does not exist and so has been treated as a topic
gc html
granges-utils html
finding level-2 HTML links ... done
hs-chrs html
kmers-data html
kmers html
motif-functions html
mutation-context html
mutation-distribution html
mutational-normalization html
mutational-plots html
mutational-signatures html
mutect html
number-signatures html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpwdhs6h/R.INSTALL295c2baa5cb1/SomaticSignatures/man/number-signatures.Rd:98: file link 'evar' in package 'NMF' does not exist and so has been treated as a topic
sca-data html
signature-plot-functions html
signatures21-data html
utils html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SomaticSignatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SomaticSignatures' as SomaticSignatures_2.26.0.zip
* DONE (SomaticSignatures)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'SomaticSignatures' successfully unpacked and MD5 sums checked