Peter Blattmann
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/SWATH2stats |
| Branch: RELEASE_3_12 |
| Last Commit: c27aa06 |
| Last Changed Date: 2021-04-16 09:46:28 -0400 (Fri, 16 Apr 2021) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:52 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the SWATH2stats package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1821/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SWATH2stats 1.20.1 (landing page) Peter Blattmann
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SWATH2stats |
| Version: 1.20.1 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SWATH2stats_1.20.1.tar.gz && rm -rf SWATH2stats.buildbin-libdir && mkdir SWATH2stats.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SWATH2stats.buildbin-libdir SWATH2stats_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SWATH2stats_1.20.1.zip && rm SWATH2stats_1.20.1.tar.gz SWATH2stats_1.20.1.zip |
| StartedAt: 2021-05-05 17:27:04 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:28:14 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 70.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SWATH2stats_1.20.1.tar.gz && rm -rf SWATH2stats.buildbin-libdir && mkdir SWATH2stats.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SWATH2stats.buildbin-libdir SWATH2stats_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SWATH2stats_1.20.1.zip && rm SWATH2stats_1.20.1.tar.gz SWATH2stats_1.20.1.zip
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install for i386
* installing *source* package 'SWATH2stats' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SWATH2stats'
finding HTML links ... done
JPP_update html
MSstats_data html
OpenSWATH_data html
Spyogenes html
Study_design html
add_genesymbol html
assess_decoy_rate html
assess_fdr_byrun html
assess_fdr_overall html
convert4MSstats html
convert4PECA html
convert4aLFQ html
convert4mapDIA html
convert4pythonscript html
convert_protein_ids html
count_analytes html
disaggregate html
filter_all_peptides html
filter_mscore html
filter_mscore_condition html
filter_mscore_fdr html
filter_mscore_freqobs html
filter_on_max_peptides html
filter_on_min_peptides html
filter_proteotypic_peptides html
import_data html
load_mart html
mscore4assayfdr html
mscore4pepfdr html
mscore4protfdr html
plot.fdr_cube html
plot.fdr_table html
plot_correlation_between_samples html
plot_variation html
plot_variation_vs_total html
reduce_OpenSWATH_output html
removeDecoyProteins html
rmDecoyProt html
sample_annotation html
transform_MSstats_OpenSWATH html
unifyProteinGroupLabels html
validate_columns html
write_matrix_peptides html
write_matrix_proteins html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SWATH2stats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SWATH2stats' as SWATH2stats_1.20.1.zip
* DONE (SWATH2stats)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'SWATH2stats' successfully unpacked and MD5 sums checked