Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:36:56 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the SPLINTER package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1775/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SPLINTER 1.16.0 (landing page) Diana Low
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SPLINTER |
Version: 1.16.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings SPLINTER_1.16.0.tar.gz |
StartedAt: 2021-05-06 06:31:45 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 06:38:32 -0400 (Thu, 06 May 2021) |
EllapsedTime: 406.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SPLINTER.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings SPLINTER_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/SPLINTER.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SPLINTER/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SPLINTER’ version ‘1.16.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SPLINTER’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getPCRsizes 13.997 0.200 14.225 eventPlot 12.314 0.251 12.585 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SPLINTER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SPLINTER ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘SPLINTER’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package can be loaded from final location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package keeps a record of temporary installation path * DONE (SPLINTER)
SPLINTER.Rcheck/SPLINTER-Ex.timings
name | user | system | elapsed | |
acceptor.m | 0.003 | 0.001 | 0.004 | |
addEnsemblAnnotation | 0.008 | 0.001 | 0.009 | |
callPrimer3 | 0.000 | 0.000 | 0.001 | |
checkPrimer | 0.115 | 0.005 | 0.120 | |
compatible_cds | 0.001 | 0.001 | 0.003 | |
compatible_tx | 0.002 | 0.002 | 0.003 | |
donor.m | 0.001 | 0.002 | 0.003 | |
eventOutcomeCompare | 1.966 | 0.097 | 2.065 | |
eventOutcomeTranslate | 0.601 | 0.015 | 0.616 | |
eventPlot | 12.314 | 0.251 | 12.585 | |
extendROI | 1.238 | 0.033 | 1.272 | |
extractSpliceEvents | 0.003 | 0.001 | 0.004 | |
extractSpliceSites | 0.136 | 0.001 | 0.137 | |
findCompatibleEvents | 0.570 | 0.002 | 0.573 | |
findCompatibleExon | 0.349 | 0.001 | 0.350 | |
findTX | 0.035 | 0.000 | 0.036 | |
getPCRsizes | 13.997 | 0.200 | 14.225 | |
getRegionDNA | 0.340 | 0.015 | 0.355 | |
insertRegion | 0.278 | 0.007 | 0.288 | |
makeROI | 0.530 | 0.001 | 0.533 | |
makeUniqueIDs | 0.007 | 0.001 | 0.006 | |
pcr_result1 | 0.001 | 0.001 | 0.002 | |
plot_seqlogo | 0.048 | 0.002 | 0.051 | |
primers | 0.001 | 0.001 | 0.002 | |
psiPlot | 0.281 | 0.008 | 0.289 | |
region_minus_exon | 0.001 | 0.001 | 0.002 | |
roi | 0.001 | 0.001 | 0.001 | |
shapiroAcceptor | 0.609 | 0.015 | 0.626 | |
shapiroDonor | 0.656 | 0.019 | 0.676 | |
splice_data | 0.001 | 0.001 | 0.002 | |
splice_fasta | 0.001 | 0.001 | 0.002 | |
splitPCRhit | 0.017 | 0.001 | 0.017 | |
thecds | 0.001 | 0.001 | 0.003 | |
theexons | 0.001 | 0.001 | 0.002 | |
valid_cds | 0.001 | 0.001 | 0.002 | |
valid_tx | 0.001 | 0.001 | 0.002 | |