Martin Morgan
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/RaggedExperiment |
| Branch: RELEASE_3_12 |
| Last Commit: 5940392 |
| Last Changed Date: 2021-04-16 11:36:42 -0400 (Fri, 16 Apr 2021) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:06 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the RaggedExperiment package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1446/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RaggedExperiment 1.14.2 (landing page) Martin Morgan
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: RaggedExperiment |
| Version: 1.14.2 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/RaggedExperiment_1.14.2.tar.gz && rm -rf RaggedExperiment.buildbin-libdir && mkdir RaggedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RaggedExperiment.buildbin-libdir RaggedExperiment_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL RaggedExperiment_1.14.2.zip && rm RaggedExperiment_1.14.2.tar.gz RaggedExperiment_1.14.2.zip |
| StartedAt: 2021-05-05 17:40:21 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:41:05 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 43.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/RaggedExperiment_1.14.2.tar.gz && rm -rf RaggedExperiment.buildbin-libdir && mkdir RaggedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RaggedExperiment.buildbin-libdir RaggedExperiment_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL RaggedExperiment_1.14.2.zip && rm RaggedExperiment_1.14.2.tar.gz RaggedExperiment_1.14.2.zip
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install for i386
* installing *source* package 'RaggedExperiment' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RaggedExperiment'
finding HTML links ... done
RaggedExperiment-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:117: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:141: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:142: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:143: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:152: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:154: file link 'exonsBy' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:167: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:172: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:173: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:182: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:206: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:206: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:207: file link 'Views' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:207: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:207: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:208: file link 'ViewsList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:209: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:213: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:215: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:280: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:280: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:281: file link 'Views' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:281: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:281: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:282: file link 'ViewsList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:283: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:287: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:289: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:415: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpcz7Bo3/R.INSTALL126475306acc/RaggedExperiment/man/RaggedExperiment-class.Rd:429: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
RaggedExperiment-package html
assay-functions html
coerce-functions html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RaggedExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RaggedExperiment' as RaggedExperiment_1.14.2.zip
* DONE (RaggedExperiment)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'RaggedExperiment' successfully unpacked and MD5 sums checked