Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:36:37 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the RUVcorr package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1603/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RUVcorr 1.22.0 (landing page) Saskia Freytag
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: RUVcorr |
Version: 1.22.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RUVcorr.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RUVcorr_1.22.0.tar.gz |
StartedAt: 2021-05-06 05:46:29 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 05:47:27 -0400 (Thu, 06 May 2021) |
EllapsedTime: 58.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RUVcorr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RUVcorr.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RUVcorr_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/RUVcorr.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RUVcorr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RUVcorr’ version ‘1.22.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RUVcorr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RUVcorr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RUVcorr ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘RUVcorr’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RUVcorr)
RUVcorr.Rcheck/RUVcorr-Ex.timings
name | user | system | elapsed | |
ECDFPlot | 0.627 | 0.038 | 0.666 | |
PCAPlot | 1.958 | 0.051 | 2.014 | |
RLEPlot | 2.065 | 0.089 | 2.160 | |
RUVNaiveRidge | 0.483 | 0.023 | 0.508 | |
assessQuality | 0.064 | 0.007 | 0.071 | |
background | 0.059 | 0.005 | 0.064 | |
calculateThreshold | 1.473 | 0.048 | 1.525 | |
compareRanks | 0.882 | 0.022 | 0.906 | |
correlationPlot | 0.113 | 0.016 | 0.129 | |
eigenvaluePlot | 0.253 | 0.003 | 0.256 | |
empNegativeControls | 0.195 | 0.009 | 0.205 | |
findWeights | 0.286 | 0.015 | 0.301 | |
genePlot | 0.237 | 0.008 | 0.244 | |
histogramPlot | 0.323 | 0.010 | 0.335 | |
is.optimizeParameters | 0 | 0 | 0 | |
is.simulateGEdata | 0 | 0 | 0 | |
optimizeParameters | 1.580 | 0.030 | 1.612 | |
plot.optimizeParameters | 1.914 | 0.044 | 1.961 | |
plotDesign | 0.661 | 0.025 | 0.688 | |
plotThreshold | 1.573 | 0.029 | 1.627 | |
print.simulateGEdata | 0 | 0 | 0 | |
prioritise | 0.348 | 0.014 | 0.362 | |
simulateGEdata | 0.263 | 0.005 | 0.267 | |
wcor | 0.341 | 0.011 | 0.352 | |