Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:36:05 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the PepsNMR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1325/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PepsNMR 1.8.1 (landing page) Manon Martin
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: PepsNMR |
Version: 1.8.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.8.1.tar.gz |
StartedAt: 2021-05-06 04:36:34 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 04:48:00 -0400 (Thu, 06 May 2021) |
EllapsedTime: 685.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PepsNMR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.8.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/PepsNMR.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PepsNMR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PepsNMR’ version ‘1.8.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PepsNMR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed PEPSNMR-package 281.265 11.622 293.331 PreprocessingChain 280.611 11.023 291.963 Warping 13.299 0.930 14.244 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
PepsNMR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PepsNMR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘PepsNMR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PepsNMR)
PepsNMR.Rcheck/PepsNMR-Ex.timings
name | user | system | elapsed | |
Apodization | 0.690 | 0.070 | 0.763 | |
BaselineCorrection | 0.606 | 0.103 | 0.710 | |
Bucketing | 0.103 | 0.004 | 0.106 | |
Draw | 1.397 | 0.067 | 1.467 | |
DrawPCA | 0.791 | 0.027 | 0.823 | |
DrawSignal | 0.758 | 0.021 | 0.781 | |
FirstOrderPhaseCorrection | 0.043 | 0.002 | 0.045 | |
FourierTransform | 0.031 | 0.004 | 0.034 | |
GroupDelayCorrection | 0.059 | 0.019 | 0.077 | |
InternalReferencing | 0.042 | 0.004 | 0.044 | |
NegativeValuesZeroing | 0.025 | 0.005 | 0.030 | |
Normalization | 0.010 | 0.001 | 0.011 | |
PEPSNMR-package | 281.265 | 11.622 | 293.331 | |
PreprocessingChain | 280.611 | 11.023 | 291.963 | |
ReadFids | 0.344 | 0.034 | 0.379 | |
RegionRemoval | 0.010 | 0.001 | 0.010 | |
SolventSuppression | 0.124 | 0.048 | 0.172 | |
Warping | 13.299 | 0.930 | 14.244 | |
WindowSelection | 0.042 | 0.001 | 0.042 | |
ZeroFilling | 0.379 | 0.026 | 0.405 | |
ZeroOrderPhaseCorrection | 0.093 | 0.000 | 0.093 | |
ZoneAggregation | 0.380 | 0.121 | 0.504 | |