Diego Diez
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/PWMEnrich |
| Branch: RELEASE_3_12 |
| Last Commit: 5544f38 |
| Last Changed Date: 2020-10-27 10:46:10 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:55 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the PWMEnrich package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1418/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PWMEnrich 4.26.0 (landing page) Diego Diez
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: PWMEnrich |
| Version: 4.26.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/PWMEnrich_4.26.0.tar.gz && rm -rf PWMEnrich.buildbin-libdir && mkdir PWMEnrich.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PWMEnrich.buildbin-libdir PWMEnrich_4.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL PWMEnrich_4.26.0.zip && rm PWMEnrich_4.26.0.tar.gz PWMEnrich_4.26.0.zip |
| StartedAt: 2021-05-05 17:05:12 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:06:02 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 49.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/PWMEnrich_4.26.0.tar.gz && rm -rf PWMEnrich.buildbin-libdir && mkdir PWMEnrich.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PWMEnrich.buildbin-libdir PWMEnrich_4.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL PWMEnrich_4.26.0.zip && rm PWMEnrich_4.26.0.tar.gz PWMEnrich_4.26.0.zip
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install for i386
* installing *source* package 'PWMEnrich' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PWMEnrich'
finding HTML links ... done
DNAStringSetToList html
MotifEnrichmentReport-class html
MotifEnrichmentResults-class html
PFMtoPWM html
PWM-class html
PWMCutoffBackground-class html
PWMEmpiricalBackground-class html
PWMEnrich-package html
PWMGEVBackground-class html
PWMLognBackground-class html
PWMUnscaled html
affinitySequenceSet html
as.data.frame-MotifEnrichmentReport-method
html
cloverPvalue1seq html
cloverScore html
colMedians html
colSds html
concatenateSequences html
cutoffZscore html
cutoffZscoreSequenceSet html
divideRows html
dot-inputPFMfromMatrixOrPWM html
dot-inputParamMotifs html
dot-inputParamSequences html
dot-normalize.bg.seq html
dot-normargPfm html
dot-normargPriorParams html
empiricalPvalue html
empiricalPvalueSequenceSet html
getBackgroundFrequencies html
getPromoters html
gevPerSequence html
groupReport-MotifEnrichmentResults-method
html
keepFinite html
logNormPval html
logNormPvalSequenceSet html
makeBackground html
makePWMCutoffBackground html
makePWMEmpiricalBackground html
makePWMGEVBackground html
makePWMLognBackground html
makePWMPvalCutoffBackground html
makePWMPvalCutoffBackgroundFromSeq html
makePriors html
makeStartEndPos html
matrixShuffleZscorePerSequence html
maxAligned html
motifDiffEnrichment html
motifEcdf html
motifEnrichment html
motifIC html
motifPrAUC html
motifRankingForGroup-MotifEnrichmentResults-method
html
motifRankingForSequence-MotifEnrichmentResults-method
html
motifRecoveryAUC html
motifScores html
motifScoresBigMemory html
motifSimilarity html
operators-MotifEnrichmentReport html
operators-MotifEnrichmentResults html
operators-PWM html
operators-PWMCutoffBackground html
operators-PWMEmpiricalBackground html
operators-PWMGEVBackground html
operators-PWMLognBackground html
plot-MotifEnrichmentReport-missing-method
html
plot-PWM-missing-method html
plotMotifScores html
plotMultipleMotifs html
plotPFM html
plotTopMotifsGroup-MotifEnrichmentResults-method
html
plotTopMotifsSequence-MotifEnrichmentResults-method
html
rankingProcessAndReturn html
readJASPAR html
readMotifs html
readTRANSFAC html
registerCoresPWMEnrich html
reverseComplement-PWM-method html
scanWithPWM html
seqLogoGrid html
sequenceReport-MotifEnrichmentResults-method
html
show-MotifEnrichmentReport-method html
show-MotifEnrichmentResults-method html
show-PWM-method html
show-PWMCutoffBackground-method html
show-PWMEmpiricalBackground-method html
show-PWMGEVBackground-method html
show-PWMLognBackground-method html
subsetting-PWMCutoffBackground html
subsetting-PWMEmpiricalBackground html
subsetting-PWMGEVBackground html
subsetting-PWMLognBackground html
toPWM html
tryAllMotifAlignments html
useBigMemoryPWMEnrich html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PWMEnrich' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PWMEnrich' as PWMEnrich_4.26.0.zip
* DONE (PWMEnrich)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'PWMEnrich' successfully unpacked and MD5 sums checked