Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:36:11 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the PROcess package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1389/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PROcess 1.66.0 (landing page) Xiaochun Li
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: PROcess |
Version: 1.66.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PROcess.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PROcess_1.66.0.tar.gz |
StartedAt: 2021-05-06 04:54:14 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 04:55:14 -0400 (Thu, 06 May 2021) |
EllapsedTime: 60.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PROcess.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PROcess.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PROcess_1.66.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/PROcess.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PROcess/DESCRIPTION’ ... OK * this is package ‘PROcess’ version ‘1.66.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PROcess’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘Icens’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE gelmap: warning in axis(1, at = at.mz, lab = at.mz, las = 2, lty = 0, cex.axis = 0.8): partial argument match of 'lab' to 'labels' gelmap: warning in axis(2, at = at.col, lab = sampLab[at.col], las = 2, lty = 0, cex.axis = cexCol): partial argument match of 'lab' to 'labels' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.12-bioc/meat/PROcess.Rcheck/00check.log’ for details.
PROcess.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PROcess ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘PROcess’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PROcess)
PROcess.Rcheck/PROcess-Ex.timings
name | user | system | elapsed | |
aveSpec | 0.291 | 0.023 | 0.317 | |
bslnoff | 0.374 | 0.010 | 0.383 | |
getPeaks | 2.942 | 0.096 | 3.040 | |
intg | 0.001 | 0.000 | 0.002 | |
is.multiple | 0.001 | 0.001 | 0.001 | |
isPeak | 2.158 | 0.083 | 2.245 | |
peaks | 0.047 | 0.001 | 0.048 | |
pk2bmkr | 2.836 | 0.067 | 2.905 | |
quality | 3.992 | 0.125 | 4.122 | |
renorm | 0.598 | 0.005 | 0.604 | |
rmBaseline | 0.628 | 0.007 | 0.635 | |
specZoom | 1.991 | 0.036 | 2.032 | |