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INSTALL report for OVESEG on tokay1

This page was generated on 2021-05-06 12:32:40 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the OVESEG package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1286/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OVESEG 1.6.0  (landing page)
Lulu Chen
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/OVESEG
Branch: RELEASE_3_12
Last Commit: 5809f13
Last Changed Date: 2020-10-27 11:41:44 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: OVESEG
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/OVESEG_1.6.0.tar.gz && rm -rf OVESEG.buildbin-libdir && mkdir OVESEG.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OVESEG.buildbin-libdir OVESEG_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL OVESEG_1.6.0.zip && rm OVESEG_1.6.0.tar.gz OVESEG_1.6.0.zip
StartedAt: 2021-05-05 17:46:47 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:47:40 -0400 (Wed, 05 May 2021)
EllapsedTime: 52.6 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/OVESEG_1.6.0.tar.gz && rm -rf OVESEG.buildbin-libdir && mkdir OVESEG.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OVESEG.buildbin-libdir OVESEG_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL OVESEG_1.6.0.zip && rm OVESEG_1.6.0.tar.gz OVESEG_1.6.0.zip
###
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100  528k  100  528k    0     0  7228k      0 --:--:-- --:--:-- --:--:-- 7344k

install for i386

* installing *source* package 'OVESEG' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c pairwise_tstat_unscaled.cpp -o pairwise_tstat_unscaled.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c row_min.cpp -o row_min.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c row_which_max.cpp -o row_which_max.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c shuffle_topm.cpp -o shuffle_topm.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o OVESEG.dll tmp.def RcppExports.o pairwise_tstat_unscaled.o row_min.o row_which_max.o shuffle_topm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/OVESEG.buildbin-libdir/00LOCK-OVESEG/00new/OVESEG/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OVESEG'
    finding HTML links ... done
    OVESEG-package                          html  
    OVESEGtest                              html  
    OVESEGtstat                             html  
    OVEtstatPermTopM                        html  
    RocheBT                                 html  
    countBT                                 html  
    nullDistri                              html  
    pairwise_tstat_unscaled                 html  
    patternDistri                           html  
    permfunc                                html  
    postProbNull                            html  
    pvalueWeightedEst                       html  
    row_min                                 html  
    row_which_max                           html  
    shuffle_topm                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'OVESEG' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c pairwise_tstat_unscaled.cpp -o pairwise_tstat_unscaled.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c row_min.cpp -o row_min.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c row_which_max.cpp -o row_which_max.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c shuffle_topm.cpp -o shuffle_topm.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o OVESEG.dll tmp.def RcppExports.o pairwise_tstat_unscaled.o row_min.o row_which_max.o shuffle_topm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/OVESEG.buildbin-libdir/OVESEG/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OVESEG' as OVESEG_1.6.0.zip
* DONE (OVESEG)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'OVESEG' successfully unpacked and MD5 sums checked