Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:32:26 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the NarrowPeaks package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1201/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Pedro Madrigal
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
Package: NarrowPeaks |
Version: 1.34.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/NarrowPeaks_1.34.0.tar.gz && rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NarrowPeaks.buildbin-libdir NarrowPeaks_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL NarrowPeaks_1.34.0.zip && rm NarrowPeaks_1.34.0.tar.gz NarrowPeaks_1.34.0.zip |
StartedAt: 2021-05-05 19:16:06 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 19:16:32 -0400 (Wed, 05 May 2021) |
EllapsedTime: 25.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/NarrowPeaks_1.34.0.tar.gz && rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NarrowPeaks.buildbin-libdir NarrowPeaks_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL NarrowPeaks_1.34.0.zip && rm NarrowPeaks_1.34.0.tar.gz NarrowPeaks_1.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 114k 100 114k 0 0 6016k 0 --:--:-- --:--:-- --:--:-- 6386k install for i386 * installing *source* package 'NarrowPeaks' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wig2CSARScore.c -o wig2CSARScore.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wig2CSARScore_R_wrapper.c -o wig2CSARScore_R_wrapper.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o NarrowPeaks.dll tmp.def wig2CSARScore.o wig2CSARScore_R_wrapper.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/NarrowPeaks.buildbin-libdir/00LOCK-NarrowPeaks/00new/NarrowPeaks/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'NarrowPeaks' finding HTML links ... done NarrowPeaks-internal html NarrowPeaks-package html narrowpeaks html narrowpeaksDiff html wig2CSARScore html wigfile_test html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'NarrowPeaks' is deprecated and will be removed from Bioconductor version 3.13 ** testing if installed package can be loaded from final location Warning: Package 'NarrowPeaks' is deprecated and will be removed from Bioconductor version 3.13 ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'NarrowPeaks' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wig2CSARScore.c -o wig2CSARScore.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wig2CSARScore_R_wrapper.c -o wig2CSARScore_R_wrapper.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o NarrowPeaks.dll tmp.def wig2CSARScore.o wig2CSARScore_R_wrapper.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/NarrowPeaks.buildbin-libdir/NarrowPeaks/libs/x64 ** testing if installed package can be loaded Warning: Package 'NarrowPeaks' is deprecated and will be removed from Bioconductor version 3.13 * MD5 sums packaged installation of 'NarrowPeaks' as NarrowPeaks_1.34.0.zip * DONE (NarrowPeaks) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'NarrowPeaks' successfully unpacked and MD5 sums checked