| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:32:21 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the MsCoreUtils package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1153/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MsCoreUtils 1.2.0 (landing page) RforMassSpectrometry Package Maintainer
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MsCoreUtils |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MsCoreUtils_1.2.0.tar.gz && rm -rf MsCoreUtils.buildbin-libdir && mkdir MsCoreUtils.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MsCoreUtils.buildbin-libdir MsCoreUtils_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MsCoreUtils_1.2.0.zip && rm MsCoreUtils_1.2.0.tar.gz MsCoreUtils_1.2.0.zip |
| StartedAt: 2021-05-05 16:57:07 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 16:57:53 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 46.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MsCoreUtils_1.2.0.tar.gz && rm -rf MsCoreUtils.buildbin-libdir && mkdir MsCoreUtils.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MsCoreUtils.buildbin-libdir MsCoreUtils_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MsCoreUtils_1.2.0.zip && rm MsCoreUtils_1.2.0.tar.gz MsCoreUtils_1.2.0.zip
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install for i386
* installing *source* package 'MsCoreUtils' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c closest.c -o closest.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c impNeighbourAvg.c -o impNeighbourAvg.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c join.c -o join.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c localMaxima.c -o localMaxima.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o MsCoreUtils.dll tmp.def closest.o impNeighbourAvg.o init.o join.o localMaxima.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/MsCoreUtils.buildbin-libdir/00LOCK-MsCoreUtils/00new/MsCoreUtils/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MsCoreUtils'
finding HTML links ... done
aggregate_by_vector html
binning html
check html
coerce html
colCounts html
distance html
group html
i2index html
imputation html
localMaxima html
matching html
medianPolish html
noise html
normalize html
peakRegionMask html
ppm html
range html
rbindFill html
refineCentroids html
rla html
robustSummary html
smooth html
validation html
valleys html
vapply html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MsCoreUtils' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c closest.c -o closest.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c impNeighbourAvg.c -o impNeighbourAvg.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c join.c -o join.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c localMaxima.c -o localMaxima.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o MsCoreUtils.dll tmp.def closest.o impNeighbourAvg.o init.o join.o localMaxima.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/MsCoreUtils.buildbin-libdir/MsCoreUtils/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MsCoreUtils' as MsCoreUtils_1.2.0.zip
* DONE (MsCoreUtils)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'MsCoreUtils' successfully unpacked and MD5 sums checked