Multiple platform build/check report for BioC 3.12 - CHECK report for MSEADbi on tokay1

Package: MSEADbi

Version: 1.0.0

Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MSEADbi.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings MSEADbi_1.0.0.tar.gz

StartedAt: 2021-05-06 04:50:34 -0400 (Thu, 06 May 2021)

EndedAt: 2021-05-06 04:53:06 -0400 (Thu, 06 May 2021)

EllapsedTime: 151.4 seconds

RetCode: 0

Status: OK

CheckDir: MSEADbi.Rcheck

Warnings: 0

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MSEADbi.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings MSEADbi_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/MSEADbi.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MSEADbi/DESCRIPTION' ... OK
* this is package 'MSEADbi' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MSEADbi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
makeMSEAPackage  0.2   0.06   22.06
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
makeMSEAPackage  0.2   0.01   19.29
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MSEADbi_1.0.0.tar.gz && rm -rf MSEADbi.buildbin-libdir && mkdir MSEADbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSEADbi.buildbin-libdir MSEADbi_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MSEADbi_1.0.0.zip && rm MSEADbi_1.0.0.tar.gz MSEADbi_1.0.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  339k  100  339k    0     0  17.3M      0 --:--:-- --:--:-- --:--:-- 18.4M

install for i386

* installing *source* package 'MSEADbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MSEADbi'
    finding HTML links ... done
    MSEADb                                  html  
    columns                                 html  
    dbInfo                                  html  
    dbconn                                  html  
    dbfile                                  html  
    dbschema                                html  
    keys                                    html  
    keytypes                                html  
    makeMSEAPackage                         html  
    mseaListPathwaySubjects                 html  
    mseaNomenclature                        html  
    mseaPackageName                         html  
    mseaVersion                             html  
    select                                  html  
    species                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MSEADbi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSEADbi' as MSEADbi_1.0.0.zip
* DONE (MSEADbi)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'MSEADbi' successfully unpacked and MD5 sums checked


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> 
> proc.time()
   user  system elapsed 
   0.29    0.04    0.32


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> 
> proc.time()
   user  system elapsed 
   0.25    0.04    0.28

name	user	system	elapsed
MSEADb	0	0	0
columns	0	0	0
dbInfo	0	0	0
dbconn	0	0	0
dbfile	0	0	0
dbschema	0	0	0
keys	0	0	0
keytypes	0	0	0
makeMSEAPackage	0.20	0.06	22.06
mseaListPathwaySubjects	0	0	0
mseaNomenclature	0	0	0
mseaPackageName	0	0	0
mseaVersion	0	0	0
select	0	0	0
species	0	0	0

name	user	system	elapsed
MSEADb	0	0	0
columns	0	0	0
dbInfo	0	0	0
dbconn	0	0	0
dbfile	0	0	0
dbschema	0	0	0
keys	0	0	0
keytypes	0	0	0
makeMSEAPackage	0.20	0.01	19.29
mseaListPathwaySubjects	0	0	0
mseaNomenclature	0	0	0
mseaPackageName	0	0	0
mseaVersion	0	0	0
select	0.02	0.00	0.02
species	0	0	0

CHECK report for MSEADbi on tokay1

Summary

Command output

Installation output

Tests output

Example timings